1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaagcttgcttataccggtttgctttttgaagctaaaagttcgatgatgatgctgaagGTTGAAGCAAAGGGTGGACTGGCAAAGCGGCTATTTCAAACCGCCTACAGAAGAAGATTAGGCGCTGTTGAAGGAAGCTGGCTCGGTGCGTGGGGAATAG
species | Selaginella moellendorffii |
transcript | EFJ35799 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGCTGTTCCGGCTATACTTGATCGCGTTCGAGATGGTGTGAGAAGAACG GTTGAAGCAAAAGGTGGACTGGCAAAGCGGCTATTTCAAACCGCCTACAGAEST: gi|169093928|gb|FE493516.1|FE493516
genomic: CTGCTGTTCCGGCTATACTTGATCGCGTTCGAGATGGTGTGAGAAGAACGgtaagcttgc ... gatgctgaagGTTGAAGCAAAGGGTGGACTGGCAAAGCGGCTATTTCAAACCGCCTACAGA
EST: CTGCTGTTCCGGCTATACTTGATCGCGTTCGAGATGGTGTGAGAAGAACG GTTGAAGCANAGGGTGGACTGGCAAAGCGGCTATTTCAAACCGCCTACAGAEST: gi|169074866|gb|FE483787.1|FE483787
genomic: CTGCTGTTCCGGCTATACTTGATCGCGTTCGAGATGGTGTGAGAAGAACGgtaagcttgc ... gatgctgaagGTTGAAGCAAAGGGTGGACTGGCAAAGCGGCTATTTCAAACCGCCTACAGA
EST: CTGCTGTTCCGGCTATACTTGATCGCGTTCGAGATGGTGTGAGAAGAACG GTTGAAGCAAAGGGTGGACTGGCAAAGCGGCTATTTCAAACCGCCTACAGAEST: gi|169032302|gb|FE439351.1|FE439351
genomic: CTGCTGTTCCGGCTATACTTGATCGCGTTCGAGATGGTGTGAGAAGAACGgtaagcttgc ... gatgctgaagGTTGAAGCAAAGGGTGGACTGGCAAAGCGGCTATTTCAAACCGCCTACAGA
EST: CTGCTGTTCCGGCTATACTTGATCGCGTTCGAGATGGTGTGAGAAGAACG GTTGAAGCAAAAGGTGGACTGGCAAAGCGGCTATTTCAAACCGCCTACAGA
genomic: CTGCTGTTCCGGCTATACTTGATCGCGTTCGAGATGGTGTGAGAAGAACGgtaagcttgc ... gatgctgaagGTTGAAGCAAAGGGTGGACTGGCAAAGCGGCTATTTCAAACCGCCTACAGA
gcttgcttataccggtttgctttttgaagctaaaagttcgatgatgatgctgaagGTTGAAGCAAAGGGTGGACTGGCAAAGCGGCTATTTCAAACCGCCTACAGAAGAAGATTAGGCGCTGTTGAAGGAAGCTGGCTCGGTGCGTGGGGAATAG
agctaaa putative branch site (score: 31)
tttttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcttgcttataccggtttgctttttgaagctaaaagttcgatgatgatgctgaagGTTGAAGCAAAGGGTGGACTGGCAAAGCGGCTATTTCAAACCGCCTACAGAAGAAGATTAGGCGCTGTTGAAGGAAGCTGGCTCGGTGCGTGGGGAATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG