1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgaagtaaagctagttttgttgttgactcggatttacatctttggatctcttgtaaccgcagCCAGCTCCGGGTGGTCGCTGAAGTACGACATCCTGATCTTTTCCAGAATTCCAATATAGTCTCCAG
species | Selaginella moellendorffii |
transcript | EFJ35654 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTTCACGCGATACAG CCAGCTCCGGGTGGTCGCTGAAGTACGACATCCTGATCTTTTCCAGAATTCEST: gi|169021159|gb|FE431470.1|FE431470
genomic: TTTCACGCGATACAGgtgaagtaaa ... gtaaccgcagCCAGCTCCGGGTGGTCGCTGAAGTACGACATCCTGATCTTTTCCAGAATTC
EST: ACAGGATTGGAAGACTTCCAAGCCGTTCTTAATTCTTTCACGCGATACAG CCAGCTCCGGGTGGTCGCTGAAGTACGACATCCTGATCTTTTCCAGAATTC
genomic: ACAGGATTGGAAGACTTCCAAGCCGTTCTTAATTCTTTCACGCGATACAGgtgaagtaaa ... gtaaccgcagCCAGCTCCGGGTGGTCGCTGAAGTACGACATCCTGATCTTTTCCAGAATTC
aagctagttttgttgttgactcggatttacatctttggatctcttgtaaccgcagCCAGCTCCGGGTGGTCGCTGAAGTACGACATCCTGATCTTTTCCAGAATTCCAATATAGTCTCCAG
ttgtaac putative branch site (score: 47)
tctcttgt CT-rich tract
atttacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaagtaaagctagttttgttgttgactcggatttacatctttggatctcttgtaaccgcagCCAGCTCCGGGTGGTCGCTGAAGTACGACATCCTGATCTTTTCCAGAATTCCAATATAGTCTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG