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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtcttttcttttcgtttatatcattcgtctttatgctcttcgcgcagAACAATACTTTTTTTCATTACGCTGGGTTCCGGACGGGAAACATGCACAATATAACACAGCTTGTCCAAAATTCATTAATCGTTCAG

Basic information

species Selaginella moellendorffii
transcript EFJ35102
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169022771|gb|FE428433.1|FE428433
EST:     CGGGGCATAGACATGATATTGGACACTGGCAGATTCACATCAGTGCCGAG                         AACAATACNNNNNNNCATTACGCTGGGTTCCGGACGGGAAACATGCACAAT
genomic: CGGGGCATAGACATGATATTGGACACTGGCAGATTCACATCAGTGCCGAGgtagtctttt ... cttcgcgcagAACAATACTTTTTTTCATTACGCTGGGTTCCGGACGGGAAACATGCACAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtagtcttttcttttcgtttatatcattcgtctttatgctcttcgcgcagAACAATACTTTTTTTCATTACGCTGGGTTCCGGACGGGAAACATGCACAATATAACACAGCTTGTCCAAAATTCATTAATCGTTCAG
                                       tctttatgctcttc  CT-rich tract
                      tttatatcatt  TA-rich tract