1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gcaagttcttttggagttcgtgttttgtcattgtgtttttgctgtgatcagCACACCGCAGCCGAATCCATGGACACCCGACTGGATCACGTTCTTCCGTGATCACCGCATTGGTCACCAGCTGGAACTACTCTTCACGAATTACAGCGAC
species | Selaginella moellendorffii |
transcript | EFJ34520 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGGATTTCTGACAGGGGATTTGGATTTGAGATGGATAACACCATTGGCAG CACACCGCAGCCGAATCCATGGACACCCGACTGGATCACGTTCTTCCGTGAEST: gi|169021050|gb|FE430659.1|FE430659
genomic: GGGATTTCCGACAGAGGATTTGGATTTGAGATGGATAACACCATTGGCAGgcaagttctt ... ctgtgatcagCACACCGCAGCCGAATCCATGGACACCCGACTGGATCACGTTCTTCCGTGA
EST: GGGATTTCCGACAGAGGATTTGGATTTGAGATGGATAACACCATTGGCAG CACACCGCAGCCGAATCCATGGACACCCGACTGGATCACGTTCTTCCGTGAEST: gi|169050757|gb|FE459903.1|FE459903
genomic: GGGATTTCCGACAGAGGATTTGGATTTGAGATGGATAACACCATTGGCAGgcaagttctt ... ctgtgatcagCACACCGCAGCCGAATCCATGGACACCCGACTGGATCACGTTCTTCCGTGA
EST: GGGATTTCTGACAGGGGATTTGGATTTGAGATGGATAACACCATTGGCAG CACACCGCAGCCGAATCCATGGACACCCGACTGGATCACGTTCTTCCGTGAEST: gi|70670137|gb|DN838714.1|DN838714
genomic: GGGATTTCCGACAGAGGATTTGGATTTGAGATGGATAACACCATTGGCAGgcaagttctt ... ctgtgatcagCACACCGCAGCCGAATCCATGGACACCCGACTGGATCACGTTCTTCCGTGA
EST: GGGATTTCTGACAGGGGATTTGGATTTGAGATGGATAACACCATTGGCAG CACACCGCAGCCGAATCCATGGACACCCGACTGGATCACGTTCTTCCGTGAEST: gi|169021049|gb|FE430658.1|FE430658
genomic: GGGATTTCCGACAGAGGATTTGGATTTGAGATGGATAACACCATTGGCAGgcaagttctt ... ctgtgatcagCACACCGCAGCCGAATCCATGGACACCCGACTGGATCACGTTCTTCCGTGA
EST: GGGATTTCCGACAGAGGATTTGGATTTGAGATGGATAACACCATTGGCAG CACACCGCAGCCGAATCCATGGACACCCGACTGGATCACGTTCTTCCGTGA
genomic: GGGATTTCCGACAGAGGATTTGGATTTGAGATGGATAACACCATTGGCAGgcaagttctt ... ctgtgatcagCACACCGCAGCCGAATCCATGGACACCCGACTGGATCACGTTCTTCCGTGA
gcaagttcttttggagttcgtgttttgtcattgtgtttttgctgtgatcagCACACCGCAGCCGAATCCATGGACACCCGACTGGATCACGTTCTTCCGTGATCACCGCATTGGTCACCAGCTGGAACTACTCTTCACGAATTACAGCGAC
tttttgct CT-rich tract
ttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagttcttttggagttcgtgttttgtcattgtgtttttgctgtgatcagCACACCGCAGCCGAATCCATGGACACCCGACTGGATCACGTTCTTCCGTGATCACCGCATTGGTCACCAGCTGGAACTACTCTTCACGAATTACAGCGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA