1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgatagtatttttgccagcttgactcttaatcttttgcgaaacagGCAGAATGCTACCATTATCTTTTTGACGCCGCACTTAAGCTTCGCCAGTTTGGCCTCGACCATACAAACCCCTTGCATGGACCAGTGAAGAAACTCAGCC
species | Selaginella moellendorffii |
transcript | EFJ34464 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACCATGGGATTTACGTCTGGGGTGACTCGTGGATCAGTGCTAAAACTCAG GCAGAATGCTACCATTATCTTTTTGACGCCGCACTTAAGCTTCGCCAGTTTEST: gi|169069773|gb|FE477490.1|FE477490
genomic: ACCATGGGATTTACGTCTGGGGTGACTCGTGGATCAGTGCTAAAACTCAGgtgatagtat ... tgcgaaacagGCAGAATGCTACCATTATCTTTTTGACGCCGCACTTAAGCTTCGCCAGTTT
EST: ACCATGGGATTTACGTCTGGGGTGACTCGTGGATCAGTGCTAAAACTCAG GCAGAATGCTACCATTATCTTTTTGACGCCGCACTTAAGCTTCGCCAGTTTEST: gi|169023499|gb|FE431410.1|FE431410
genomic: ACCATGGGATTTACGTCTGGGGTGACTCGTGGATCAGTGCTAAAACTCAGgtgatagtat ... tgcgaaacagGCAGAATGCTACCATTATCTTTTTGACGCCGCACTTAAGCTTCGCCAGTTT
EST: ACCATGGGATTTACGTCTGGGGTGACTCGTGGATCAGTGCTAAAACTCAG GCAGAATGCTACCATTATCTTTTTGACGCCGCACTTAAGCTTCGCCAGTTTEST: gi|169059537|gb|FE468563.1|FE468563
genomic: ACCATGGGATTTACGTCTGGGGTGACTCGTGGATCAGTGCTAAAACTCAGgtgatagtat ... tgcgaaacagGCAGAATGCTACCATTATCTTTTTGACGCCGCACTTAAGCTTCGCCAGTTT
EST: ACCATGGGATTTACGTCTGGGGTGACTCGTGGATCAGTGCTAAAACTCAG GCAGAATGCTACCATTATCTTTTTGACGCCGCACTTAAGCTTCGCCAGTTTEST: gi|169078970|gb|FE489690.1|FE489690
genomic: ACCATGGGATTTACGTCTGGGGTGACTCGTGGATCAGTGCTAAAACTCAGgtgatagtat ... tgcgaaacagGCAGAATGCTACCATTATCTTTTTGACGCCGCACTTAAGCTTCGCCAGTTT
EST: ACCATGGGATTTACGTCTGGGGTGACTCGTGGATCAGTGCTAAAACTCAG GCAGAATGCTACCATTATCTTTTTGACGCCGCACTTAAGCTTCGCCAGTTTEST: gi|169034814|gb|FE444003.1|FE444003
genomic: ACCATGGGATTTACGTCTGGGGTGACTCGTGGATCAGTGCTAAAACTCAGgtgatagtat ... tgcgaaacagGCAGAATGCTACCATTATCTTTTTGACGCCGCACTTAAGCTTCGCCAGTTT
EST: ACCATGGGATTTACGTCTGGGGTGACTCGTGGATCAGTGCTAAAACTCAG GCAGAATGCTACCATTATCTTTTTGACGCCGCACTTAAGCTTCGCCAGTTT
genomic: ACCATGGGATTTACGTCTGGGGTGACTCGTGGATCAGTGCTAAAACTCAGgtgatagtat ... tgcgaaacagGCAGAATGCTACCATTATCTTTTTGACGCCGCACTTAAGCTTCGCCAGTTT
gtgatagtatttttgccagcttgactcttaatcttttgcgaaacagGCAGAATGCTACCATTATCTTTTTGACGCCGCACTTAAGCTTCGCCAGTTTGGCCTCGACCATACAAACCCCTTGCATGGACCAGTGAAGAAACTCAGCC
tcttaat putative branch site (score: 12)
tcttttgc CT-rich tract
atagtattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatagtatttttgccagcttgactcttaatcttttgcgaaacagGCAGAATGCTACCATTATCTTTTTGACGCCGCACTTAAGCTTCGCCAGTTTGGCCTCGACCATACAAACCCCTTGCATGGACCAGTGAAGAAACTCAGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA