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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaagaactcgatcattttgatttggatccagtttctaagcattggattgtgctggctggcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGCAAGACCGGGCCGTCGACACCGCTGCCGGACATGGTGACGATCCAAGTAC

Basic information

species Selaginella moellendorffii
transcript EFJ34304
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ34304 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: LOC_Os03g38000.2 (Oryza sativa), 3'ss of exon 3
--------------gtacaagaactcgatcattttga----tttggatccagtt---tctaagcattggattgtgctggctggcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGCAAGACCGGGCCGTCGACACCGCTGCCGGACATGGTGACGATCCAAGTAC
                 |||| |    |  ||||  |    |   ||||   ||   || | ||| | | |  |  |   | |||||| ||| | || |||||||||||||||||||| |||||||| || |||||||||   || ||| | || || ||||||||  | || || ||||| |  |
gtttgtttggttcaactcaagcatcgtagtatttaaaaacctcatgatctttttggctcaacgcacttgttcattatcttttgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTCGACTGGGACCCCAAGGGCAAGGTTGGCCCGACCACCCCTCTGCCGGATCTTGTAACCATCCATGCTC

upper sequence: EFJ34304 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: GRMZM2G093902_T02 (Zea mays), 3'ss of exon 5
------------gtacaaga----actcgatcattttgatttggatcca-------gtttctaagcattggattgtgctggctggcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGCAAGACCGGGCCGTCGACACCGCTGCCGGACATGGTGACGATCCAAGTAC
            |||  |||    |    || ||    |  |  | | |       |||  |||   |    |||   |||||  ||||| ||  | || |||||||| ||||| |||||||||||||||||||||||||||   |||||  | |  ||  | || ||  |||| || || || || |
gtttggtgcttggtatcagatgttatcttattatgcaaacatataacaaaatagctgttagtaatactctagttgacttggctt-cagGGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGCAAGCAAGGGCCAACCATGCCTTTACCTGATTTGGTTACAATTCACGTGC

upper sequence: EFJ34304 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: GRMZM2G074300_T03 (Zea mays), 3'ss of exon 3
--------------------------------------------gtacaagaactcgatcattt-tgatttggatccagtttctaagcat-tggattgtgctggctggcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGCAAGACCGGGCCGTCGACACCGCTGCCGGACATGGTGACGATCCAAGTAC
                                            |   ||| |||  ||  |    | |    ||  | ||||| | ||      || | ||| |  |||||| ||| |||| |||||||||||||||||||| |||||||| || |||||||||   || |||   || || || |||||| ||||||| |||||    |
gtttgttttgctacaattgcccgttgtaatgtctgtttgtctctgggtaagcacttcattttcgacgttccaaatgtaatttctcaacaaacatctttttctgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGCAAGGTTGGCCCGATCACCCCTCTTCCGGACCTGGTGACCATCCATACCC

upper sequence: EFJ34304 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: GRMZM2G099352_T01 (Zea mays), 3'ss of exon 3
------------------------------------------gtacaagaactcgatcattttgat--ttggatccagtttctaagcattggattgtgctggctggcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGCAAGACCGGGCCGTCGACACCGCTGCCGGACATGGTGACGATCCAAGTAC
                                          |  || | |||   |  |     |  ||  ||  | || |  | | |    |    ||| |  |||||| ||| | || |||||||||||||||||||| |||||||| || |||||||||   || |||   || || || |||||| ||||||| |||||    |
gtttgtttgctgtaatctcctcaatgtttggtcgtctctcaagagcagggactacgttttccacgtgcttcaatttaattacccaac-taacttcaatctgtcgcgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGCAAGGTTGGCCCGATCACTCCTCTTCCGGACCTGGTGACCATCCACACCC

upper sequence: EFJ34304 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: AT2G31610.1 (Arabidopsis thaliana), 3'ss of exon 4
-------gtacaagaactcgatcattt-tgatttgg--atccagtttctaagcattg---gattgtgctgg-----------ctggcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGCAAGACCGGGCCGTCGACACCGCTGCCGGACATGGTGACGATCCAAGTAC
        |  ||  | ||  | || |   |||| |  |   ||| |    || |||    ||  || |||            | ||||||||| ||||| |||||||||||||||||||| |||||||| || | ||||||  | || ||   ||||||  |||| ||  | ||||  || || |  |
gtatgctttctaatgagtctcttatctaccatttagtgagtaagtataccggctttgtctaatcttgttggttcaatccgtatttgcagGGGGTGTTGGGAATCAAGGTGAAGATCATGCTTGACTGGGACCCTACGGGCAAATCAGGACCAAAGACACCATTGCCTGATGTTGTGATCATTCATGCTC

upper sequence: EFJ34304 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: AT5G35530.1 (Arabidopsis thaliana), 3'ss of exon 5
-------------------------gtacaagaactcgatcattttgatttggatccagtttc-taagcattggattgtgctggctggcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGCAAGACCGGGCCGTCGACACCGCTGCCGGACATGGTGACGATCCAAGTAC
                          | |  |||    ||  |    | |  ||||  || |     | ||  | ||   |      |||||| ||  | ||  ||||||||||||||||||| |||||||| || ||||||||    || |||  ||||||  |||| ||  | ||||  |||||   ||
gtcagttcttcacagtggaaacctgtttcttgaatcacattctacctagtgagatcttgtgtaacctgaatctggttaatcacatgtgcagGGTGTGCTTGGTCTCAAGGTGAAGATCATGCTTGACTGGGACCCCAAGGGCAAACAAGGACCGATGACACCATTGCCTGATGTTGTGATCATCCATACAC

upper sequence: EFJ34304 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: Vv09s0002g01460.t01 (Vitis vinifera), 3'ss of exon 5
----------------------------------gtacaagaactcgatcattt--tgatttggatccagttt-ctaagcattggattgtgctggctggcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGCAAGACCGGGCCGTCGACACCGCTGCCGGACATGGTGACGATCCAAGTAC
                                   | |||    |   |  | |  |  ||   | |   ||| ||      || | |    ||||   ||||| |||||||| |||||||||||||||||||| ||||||||||| |||||||||   || ||    ||||| || || ||  | || || |||||    |
aatctcctattgcatggttccttacctgctttgatttcaatgttttagttgtctattacttcccaccttttttacttttttgtgaacttaattggc--acagGGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGCAAGCAGGGCCCTAAAACACCTCTACCTGATCTTGTCACCATCCACACCC

upper sequence: EFJ34304 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: Vv04s0008g01750.t01 (Vitis vinifera), 3'ss of exon 5
----------------------------------------------gtacaagaactcgatcattttgatt--tggatccagtttctaagcattggattgtgctggctggcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGCAAGACCGGGCCGTCGACACCGCTGCCGGACATGGTGACGATCCAAGTAC
                                                |     | |  ||||||||  ||  || |||| |  |       ||   ||    |||     |||| ||  | || |||||||| ||||||||||| ||||||||||| |||||||||   || ||  | || ||  |||| ||  ||||||| || ||   ||
gtacatgctataatgtctcctggttttggttgaattgttagctgccacatcttgatttcatcattttatttgttgaatcccggct---gattttccttttctatggtgtatagGGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGCAAGCAGGGCCCCACAACTCCATTGCCTGATCTGGTGACTATTCACACAC

upper sequence: EFJ34304 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: PP1S136_175V6.1 (Physcomitrella patens), 3'ss of exon 5
----------------------------------------------gtacaagaactcg--atcattttgatttgg--------atccagtttctaagcat---------tggattgtgctggctggcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGCAAGACCGGGCCGTCGACACCGCTGCCGGACATGGTGACGATCCAAGTAC
                                               | | |||  |||  ||| ||||   |           ||||||| | |   | |         |  |||    |   |||||||| || ||||| |||||||| ||||||||||| |||||||| ||||||||||||   || ||   ||| || || || ||  |||| || |||||  | |
gtatgtggatcttcatagtgtttttggtcttcaattttctctgacgatgctagatttcgtcatcgtttttgctctatatacctaatccagtgtattgacgtgttacttttttaattactgttcttggcagGGAGTGTTGGGCATCAAGGTAAAGATCATGCTCGACTGGGACCCAAAGGGCAAGCAAGGCCCCATGACCCCTCTTCCAGATGTGGTTACTATCCATATGC

upper sequence: EFJ34304 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: PP1S454_3V6.1 (Physcomitrella patens), 3'ss of exon 5
-----------------------------------------------------------------------------------gtacaagaactcgatcat---tttgatttgg-atccagtttctaagcattggattgtgctggctggcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGCAAGACCGGGCCGTCGACACCGCTGCCGGACATGGTGACGATCCAAGTAC
                                                                                      ||  |  ||| | ||   ||   ||||   |   |   || |      |||  ||||| ||   |||| |||||||| |||||||| ||||||||||| ||||||||||| |||||||||   || ||   ||| || || || ||  |||| || |||||  | |
gtatgttacatatccttggccatttctctgttaactgagtttttctggctcttcccttatacttcttgtatcaaattgagttatctcagcatttcggtaatgctttcagtttgccgttgtgaaactgaatcgaagatattgctgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGCAAGCAAGGACCTATGACTCCACTTCCAGATGTGGTCACCATCCATATGC

upper sequence: EFJ34304 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: PP1S127_74V6.1 (Physcomitrella patens), 3'ss of exon 5
----------------------------------------gtacaagaactcgatcattt---------tgatttggatccagtttctaagcattggattgtgctggc----tggcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGCAAGACCGGGCCGTCGACACCGCTGCCGGACATGGTGACGATCCAAGTAC
                                        |||| ||||    ||   ||         || |   ||      |   |||    |||||    |||     |  ||||| ||  |||| || ||||||||||||||||| ||||||||||||||||| |||   || ||   ||| || || || ||  | ||||| || ||  | |
gtacacaagatgcttgatgtccgtcagtagctcctttttcgtactagaaagatattgattgatagtcggtgttcccgaagtgaatctgaagtggaggattactttggtatgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGGAAGCAAGGACCCATGACTCCACTTCCCGATGTAGTGACTATTCACATGC

upper sequence: EFJ34304 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: PP1S29_222V6.1 (Physcomitrella patens), 3'ss of exon 5
-------------------------------------------------------------------------------------------gtacaagaactcgatcattttgatttggatccagtttctaagc----attgga-ttgtgctggctggcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGCAAGACCGGGCCGTCGACACCGCTGCCGGACATGGTGACGATCCAAGTAC
                                                                                           || | | || |      |  | |||  | |     | || |||    |||| |  | | |   || |||||| || ||||| |||||||| ||||||||||| ||||||||||| || |||||    || ||   ||| || || || ||  |||| || |||||  | |
gtattaacagatttttttgatacccctatgtttactcctccttgtgcagaattaatcttcgattgtttccatccttgcattatactaaatagttctataattgaggtttcattattccgttggctctactgagcctgaattgaagctattccttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGCAAACAAGGACCCATGACTCCACTCCCAGATGTGGTTACCATCCACATGC

upper sequence: EFJ34304 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: PP1S41_146V6.1 (Physcomitrella patens), 3'ss of exon 5
---------------------------------------------------------------------gtacaagaactcgatcattttg--atttggatcca--gtttctaagcattggattgtgctggctggcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGCAAGACCGGGCCGTCGACACCGCTGCCGGACATGGTGACGATCCAAGTAC
                                                                      | ||||||         ||||  | |||  |  |  || ||| || | ||  | ||  |   |  ||||| || ||||| ||||| || ||||||||||| |||||||| ||||||||||||   || ||   ||| || || || ||  |||| || |||||  | |
gtttgtcgagcagctattcagtggtgtcctctctgtggtctccttgctgatttctcctacggtctttgttttcaagaaaaaatctcgtttgcaagttgtctgtaatgtatcttagaaatgtttcgttatttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGCAAGCAAGGACCCATGACCCCTCTTCCAGATGTGGTCACCATCCATATGC

upper sequence: EFJ34304 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: PP1S487_22V6.1 (Physcomitrella patens), 3'ss of exon 4
------------------------------------------------------------------------------gtacaagaactcgatcattttgatttggatccagtttctaagcattggattgtgctggctggcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGCAAGACCGGGCCGTCGACACCGCTGCCGGACATGGTGACGATCCAAGTAC
                                                                               |   |   ||  ||||||||     | |    |   ||   || | |  |    |     |||||| || ||||| |||||||||||||| ||||| |||||||| || |||| ||||   ||  |   ||| |  || || ||  ||||||| || ||  | |
gcacgtgtggacattttttgtctaatggtggctgtttcttcatgctagagacctattacacttctacaacgtttcatgtttttaatgctacatcattttctacagaaatatgagacttgtcagttgtcttccttactgtgcagGGAGTATTGGGTATCAAGGTGAAGATTATGCTCGACTGGGACCCCAAGGTCAAGCAAGGATCTGTGACTCTACTTCCAGATGTGGTGACCATTCACATGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169072227|gb|FE479359.1|FE479359
EST:     CCGTGAACGAGTTCATTGACAGGGCCGTGCGCCACGTCCTTTTGCGCCAG                         GGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGC
genomic: CCGTGAACGAGTTCATTGACAGGGCCGTGCGCCACGTCCTTTTGCGCCAGgtacaagaac ... tggctggcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGC
EST: gi|169038060|gb|FE446658.1|FE446658
EST:     CCGTGAACGAGTTCATCGACAGGGCCGTGCGCCACGTCCTTTTGCGCCAG                         GGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGC
genomic: CCGTGAACGAGTTCATTGACAGGGCCGTGCGCCACGTCCTTTTGCGCCAGgtacaagaac ... tggctggcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGC
EST: gi|169043108|gb|FE454022.1|FE454022
EST:     CCGTGAACGAGTTCATTGACAGGGCCGTGCGCCACGTCCTTTTGCGCCAG                         GGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGC
genomic: CCGTGAACGAGTTCATTGACAGGGCCGTGCGCCACGTCCTTTTGCGCCAGgtacaagaac ... tggctggcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGC
EST: gi|70671143|gb|DN839720.1|DN839720
EST:     CCGTGAACGAGTTCATCGACTGGGCCGTGCGCCACGTCCTTTTGCGCCAG                         GGGGTTTTGGGGATCCAGGTGAAGATCATGCTGGACTGGGATCCTAAGGGC
genomic: CCGTGAACGAGTTCATTGACAGGGCCGTGCGCCACGTCCTTTTGCGCCAGgtacaagaac ... tggctggcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGC
EST: gi|169038061|gb|FE446659.1|FE446659
EST:     CCGTGAACGAGTTCATCGACAGGGCCGTGCGCCACGTCCTTTTGCGCCAG                         GGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGC
genomic: CCGTGAACGAGTTCATTGACAGGGCCGTGCGCCACGTCCTTTTGCGCCAGgtacaagaac ... tggctggcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGC
EST: gi|169103365|gb|FE507342.1|FE507342
EST:     CCGTGAACGAGTTCATCGACAGGGCCGTGCGCCACGTCCTTTTGCGCCAG                         GGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGC
genomic: CCGTGAACGAGTTCATTGACAGGGCCGTGCGCCACGTCCTTTTGCGCCAGgtacaagaac ... tggctggcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGC
EST: gi|169044789|gb|FE454104.1|FE454104
EST:     CCGTGAACGAGTTCATTGACAGGGCCGTGCGCCACGTCCTTTTGCGCCAG                         GGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGC
genomic: CCGTGAACGAGTTCATTGACAGGGCCGTGCGCCACGTCCTTTTGCGCCAGgtacaagaac ... tggctggcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGC
EST: gi|169073958|gb|FE481670.1|FE481670
EST:     CCGTGAACGAGTTCATCGACAGGGCCGTGCGCCACGTCCTTTTGCGCCAG                         GGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGC
genomic: CCGTGAACGAGTTCATTGACAGGGCCGTGCGCCACGTCCTTTTGCGCCAGgtacaagaac ... tggctggcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGC
EST: gi|169067196|gb|FE474964.1|FE474964
EST:     CCGTGAACGAGTTCATTGACAGGGCCGTGCGCCACGTCCTTTTGCGCCAG                         GGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGC
genomic: CCGTGAACGAGTTCATTGACAGGGCCGTGCGCCACGTCCTTTTGCGCCAGgtacaagaac ... tggctggcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGC
EST: gi|169034020|gb|FE444210.1|FE444210
EST:     CCGTGAACGAGTTCATTGACAGGGCCGTGCGCCACGTCCTTTTGCGCCAG                         GGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGC
genomic: CCGTGAACGAGTTCATTGACAGGGCCGTGCGCCACGTCCTTTTGCGCCAGgtacaagaac ... tggctggcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGC
EST: gi|169073959|gb|FE481671.1|FE481671
EST:     CCGTGAACGAGTTCATCGACAGGGCCGTGCGCCACGTCCTTTTGCGCCAG                         GGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGC
genomic: CCGTGAACGAGTTCATTGACAGGGCCGTGCGCCACGTCCTTTTGCGCCAGgtacaagaac ... tggctggcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGC
EST: gi|169034021|gb|FE444211.1|FE444211
EST:     CCGTGAACGAGTTCATTGACAGGGCCGTGCGCCACGTCCTTTTGCGCCAG                         GGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGC
genomic: CCGTGAACGAGTTCATTGACAGGGCCGTGCGCCACGTCCTTTTGCGCCAGgtacaagaac ... tggctggcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGC
EST: gi|169055910|gb|FE465111.1|FE465111
EST:     CCGTGAACGAGTTCATCGACAGGGCCGTGCGCCACGTCCTTTTGCGCCAG                         GGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGC
genomic: CCGTGAACGAGTTCATTGACAGGGCCGTGCGCCACGTCCTTTTGCGCCAGgtacaagaac ... tggctggcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGC
EST: gi|169055911|gb|FE465112.1|FE465112
EST:     CCGTGAACGAGTTCATCGACAGGGCCGTGCGCCACGTCCTTTTGCGCCAG                         GGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGC
genomic: CCGTGAACGAGTTCATTGACAGGGCCGTGCGCCACGTCCTTTTGCGCCAGgtacaagaac ... tggctggcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGC
EST: gi|169043107|gb|FE454021.1|FE454021
EST:     CCGTGAACGAGTTCATTGACAGGGCCGTGCGCCACGTCCTTTTGCGCCAG                         GGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGC
genomic: CCGTGAACGAGTTCATTGACAGGGCCGTGCGCCACGTCCTTTTGCGCCAGgtacaagaac ... tggctggcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 124

CGCCAAGTCGATGAAGTTCAAGGACGGATACATGATCTCGTCTGGCAGCCCCGTGAACGAGTTCATTGACAGGGCCGTGCGCCACGTCCTTTTGCGCCAGgtacaagaac ... tggctggcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGCAAGACCGGGCCGTCGACACCGCTGCCGGACATGGTGACGATCCAAGTAC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgatcattttgatttggatccagtttctaagcattggattgtgctggctggcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGCAAGACCGGGCCGTCGACACCGCTGCCGGACATGGTGACGATCCAAGTAC
       ttttgat  putative branch site (score: 124)
      attttgattt  TA-rich tract