Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctcgtttttctccccatgtgttactaaagtcttgggtgacagGATCATGTTCGGAATCAGCTTATTCAGTTCGAGCTCATTCTGACCACGGCAACGTTTGTGATGGCGTTCTATAGCATCATTGCTGGCATTTTTGGTATGA

Basic information

species Selaginella moellendorffii
transcript EFJ33960
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ33960 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: AT1G16010.3 (Arabidopsis thaliana), 3'ss of exon 6
---------------------------------------gtaagctcgtttttctccccatgtgttactaaag---tcttgggtg---acagGATCATGTTCGGAATCAGCTTATTCAGTTCGAGCTCATTCTGACCACGGCAACGTTTGTGATGGCGTTCTATAGCATCATTGCTGGCATTTTTGGTATGA
                                          || | |    |   |    ||  | || ||    ||||   |     |||||| |||| ||||||||||| || ||||||||| |  ||||||| || |||||||||||  | ||  | | | |  || ||||||| || ||||| ||||
gtaatacctcaaaattccatcttccacagctgatattaatccagattgagaatgcacaagagtcatgctgaaaacctcttcaatatctgcagGATAATGTGCGGAATCAGCTGATCCAGTTCGAGTTGCTTCTGACGACTGCAACGTTTGTTGTAGCCATATTTGGGGTCGTTGCTGGGATCTTTGGGATGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaagctcgtttttctccccatgtgttactaaagtcttgggtgacagGATCATGTTCGGAATCAGCTTATTCAGTTCGAGCTCATTCTGACCACGGCAACGTTTGTGATGGCGTTCTATAGCATCATTGCTGGCATTTTTGGTATGA
                                  tactaaa  putative branch site (score: 1)
                                         ttactaaa  TA-rich tract