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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacctgagcgtaactgttagtttttctaaagtttcttaccagGCAAAGAACATGGGTTTTGCGGGGACGAAAGATAAGCGTGCAGTAACAACGCAGCGG

Basic information

species Selaginella moellendorffii
transcript EFJ33192
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169062121|gb|FE469687.1|FE469687
EST:     AGACTACGCAGTCGGCTTTGATGATTGTAGCTCAGAAGATTGGCGTAAAG                         GCAAAGAACATGGGTTTTGCGGGGACGAAAGATAAGCGTGCAGTAACAACG
genomic: AGACTACGCAGTCGGCTTTGATGATTGTAGCTCAGAAGATTGGCGTAAAGgtaacctgag ... ttcttaccagGCAAAGAACATGGGTTTTGCGGGGACGAAAGATAAGCGTGCAGTAACAACG
EST: gi|169026332|gb|FE433423.1|FE433423
EST:     AGACTACGCAGTCGGCTTTGATGATTGTAGCTCAGAAGATTGGCGTAAAG                         GCAAAGAACATGGGTTTTGCGGGGACGAAAGATAAGCGTGCAGTAACAACG
genomic: AGACTACGCAGTCGGCTTTGATGATTGTAGCTCAGAAGATTGGCGTAAAGgtaacctgag ... ttcttaccagGCAAAGAACATGGGTTTTGCGGGGACGAAAGATAAGCGTGCAGTAACAACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaacctgagcgtaactgttagtttttctaaagtttcttaccagGCAAAGAACATGGGTTTTGCGGGGACGAAAGATAAGCGTGCAGTAACAACGCAGCGG
                                    ttctaaa  putative branch site (score: 2)
                                            tttcttacc  CT-rich tract
                             ttagtttttctaaa  TA-rich tract