1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagtgcctcggacacttttgtttcacgcagagctaatgacgctgctccttgcatgattttcagCTGGAGGAGAAGATCATTGCTGCCGGTGGCACAGTCCCGCTGCTCGAATGAGATCAATCGTGGTAGCAATATCGACCCCTTCGTTACTTAAATGGCACTA
species | Selaginella moellendorffii |
transcript | EFJ32771 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TAAAGCGCGAATTTTTCCTTGTCAAGACGAGGCTCCAGGCACTGCTCCAA CTGGAGGAGAAGATCATTGCTGCCGGTGGCACAGTCCCGCTGCTCGAATGAEST: gi|169073594|gb|FE481332.1|FE481332
genomic: TAAAGCGCGAATTTTTCCTTGTCAAGACGAGACTCCAGGCACTGCTCCAAgtaagtgcct ... tgattttcagCTGGAGGAGAAGATCATTGCTGCCGGTGGCACAGTCCCGCTGCTCGAATGA
EST: TAAAGCGCGAATTTTTCCTTGTCAAGACGAGACTCCAGGCACTGCTCCAA CTGGAGGAGAAGATCATTGCTGCCGGTGGCACAGTCCCGCTGCTCGAATGAEST: gi|169048931|gb|FE454930.1|FE454930
genomic: TAAAGCGCGAATTTTTCCTTGTCAAGACGAGACTCCAGGCACTGCTCCAAgtaagtgcct ... tgattttcagCTGGAGGAGAAGATCATTGCTGCCGGTGGCACAGTCCCGCTGCTCGAATGA
EST: TAAAGCGCGAATTTTTCCTTGTCAAGACGAGGCTCCAGGCACTGCTCCAA CTGGAGGAGAAGATCATTGCTGCCGGTGGCACAGTCCCGCTGCTCGAATGAEST: gi|169105398|gb|FE507657.1|FE507657
genomic: TAAAGCGCGAATTTTTCCTTGTCAAGACGAGACTCCAGGCACTGCTCCAAgtaagtgcct ... tgattttcagCTGGAGGAGAAGATCATTGCTGCCGGTGGCACAGTCCCGCTGCTCGAATGA
EST: TAAAGCGCGAATTTTTCCTTGTCAAGACGAGGCTCCAGGCACTGCTCCAA CTGGAGGAGAAGATCATTGCTGCCCGGTGGCACAGTCCCGCTGCTCGAATGEST: gi|169060335|gb|FE468919.1|FE468919
genomic: TAAAGCGCGAATTTTTCCTTGTCAAGACGAGACTCCAGGCACTGCTCCAAgtaagtgcct ... tgattttcagCTGGAGGAGAAGATCATTGCTGCC-GGTGGCACAGTCCCGCTGCTCGAATG
EST: TAAAGCGCGAATTTTTCCTTGTCAAGACGAGACTCCAGGCACTGCTCCAA CTGGAGGAGAAGATCATTGCTGCCGGTGGCACAGTCCCGCTGCTCGAATGAEST: gi|169060334|gb|FE468918.1|FE468918
genomic: TAAAGCGCGAATTTTTCCTTGTCAAGACGAGACTCCAGGCACTGCTCCAAgtaagtgcct ... tgattttcagCTGGAGGAGAAGATCATTGCTGCCGGTGGCACAGTCCCGCTGCTCGAATGA
EST: TAAAGCGCGAATTTTTCCTTGTCAAGACGAGACTCCAGGCACTGCTCCAA CTGGAGGAGAAGATCATTGCTGCCGGTGGCACAGTCCCGCTGCTCGAATGAEST: gi|169073595|gb|FE481333.1|FE481333
genomic: TAAAGCGCGAATTTTTCCTTGTCAAGACGAGACTCCAGGCACTGCTCCAAgtaagtgcct ... tgattttcagCTGGAGGAGAAGATCATTGCTGCCGGTGGCACAGTCCCGCTGCTCGAATGA
EST: TAAAGCGCGAATTTTTCCTTGTCAAGACGAGACTCCAGGCACTGCTCCAA CTGGAGGAGAAGATCATTGCTGCCGGTGGCACAGTCCCGCTGCTCGAATGA
genomic: TAAAGCGCGAATTTTTCCTTGTCAAGACGAGACTCCAGGCACTGCTCCAAgtaagtgcct ... tgattttcagCTGGAGGAGAAGATCATTGCTGCCGGTGGCACAGTCCCGCTGCTCGAATGA
cggacacttttgtttcacgcagagctaatgacgctgctccttgcatgattttcagCTGGAGGAGAAGATCATTGCTGCCGGTGGCACAGTCCCGCTGCTCGAATGAGATCAATCGTGGTAGCAATATCGACCCCTTCGTTACTTAAATGGCACTA
agctaat putative branch site (score: 10)
ttttc putative PPT
ttttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgcctcggacacttttgtttcacgcagagctaatgacgctgctccttgcatgattttcagCTGGAGGAGAAGATCATTGCTGCCGGTGGCACAGTCCCGCTGCTCGAATGAGATCAATCGTGGTAGCAATATCGACCCCTTCGTTACTTAAATGGCACTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA