1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttccatcatttctctggcaaagtttcctttcctagttccatcttttcctctagcgaggtctagcaaactttccagtactcactcttggtggatcgtccagAGCGAAAATTGAAGGAGTCTTTAACGTGGCAAAACCGGCTGGTCGCGGCTCTCGGCGCCGGCCGGGGGATACACTACCTTCACACGGGCGTCGTGCCGGG
species | Selaginella moellendorffii |
transcript | EFJ32701 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
tcctctagcgaggtctagcaaactttccagtactcactcttggtggatcgtccagAGCGAAAATTGAAGGAGTCTTTAACGTGGCAAAACCGGCTGGTCGCGGCTCTCGGCGCCGGCCGGGGGATACACTACCTTCACACGGGCGTCGTGCCGGG
tactcac putative branch site (score: 20)
aaacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttccatcatttctctggcaaagtttcctttcctagttccatcttttcctctagcgaggtctagcaaactttccagtactcactcttggtggatcgtccagAGCGAAAATTGAAGGAGTCTTTAACGTGGCAAAACCGGCTGGTCGCGGCTCTCGGCGCCGGCCGGGGGATACACTACCTTCACACGGGCGTCGTGCCGGG
ttccatc
- - - - tttctct
- - - - - - - - - - - tttcctt
- - - - - - - - - - - - - - - - tagttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctttcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actcttg