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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcttggaaacatttttttcctgtttgtaactcggactcttccaccagGTGGATGACCAGACGAAGCAAAAGGGGTGCACAAGTGATATGATCTTCAGCATCCCTTTTCTCATCCATTACATAAGCGGCATCATGACTCTCAACGAAG

Basic information

species Selaginella moellendorffii
transcript EFJ32454
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169060644|gb|FE467382.1|FE467382
EST:     TTCCAACTGAAGAAAACGCCCATTCCACCGCTCTCATTTTGGCTCAAG                         GTGGATGACCAGACGAAGCAAAAGGGGTGCACAAGTGATATGATCTTCAGC
genomic: TTCCAACTGAAGAAAACGCCCATTCCACCGCTCTCATTTTGGCTCAAGgtaagcttgg ... cttccaccagGTGGATGACCAGACGAAGCAAAAGGGGTGCACAAGTGATATGATCTTCAGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaagcttggaaacatttttttcctgtttgtaactcggactcttccaccagGTGGATGACCAGACGAAGCAAAAGGGGTGCACAAGTGATATGATCTTCAGCATCCCTTTTCTCATCCATTACATAAGCGGCATCATGACTCTCAACGAAG
                               ttgtaac  putative branch site (score: 2)
                                           ctcttccacc  putative PPT
              aaacattttttt  TA-rich tract