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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgggtttcatgtttttatcttgcatccaaagctcacactcaagcatacttcttgattgtggcagACAAGGTCAAGGACTGGAAGAATGTGGTGATAGCATACGAGCCAGTGTGGGCGATTGGAACAGGAAAAGTTGCCACCCCTGCGCAGGCTCAGGAGGTCCA

Basic information

species Selaginella moellendorffii
transcript EFJ31929
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ31929 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: LOC_Os01g62420.3 (Oryza sativa), 3'ss of exon 5
-------------------------------gtttgggtttca-tgtttttatct-tgcatccaaagctcacactcaagcatacttcttgattgtggcagACAAGGTCAAGGACTGGAAGAATGTGGTGATAGCATACGAGCCAGTGTGGGCGATTGGAACAGGAAAAGTTGCCACCCCTGCGCAGGCTCAGGAGGTCCA
                               | |    |   | | || | || | | || ||  | ||     ||     ||||  |    | |  |||| ||| |    || ||||  ||||| ||  | ||||| || ||||| ||||| |||||||| || || ||||| |||||||| ||||||||||||||   
tctttatggcttttgtggtccattgtactgtgctgacatagaagtcttctcatttctccacccctaactttttgtcttttttactcgtcatatttttcagAGAAGATATCCGATTGGACCAATGTTGTTTTGGCATATGAACCAGTTTGGGCCATTGGAACCGGCAAGGTTGCAACCCCTGCTCAGGCTCAGGAGGTATT

upper sequence: EFJ31929 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: LOC_Os01g62420.5 (Oryza sativa), 3'ss of exon 4
-------------------------------gtttgggtttca-tgtttttatct-tgcatccaaagctcacactcaagcatacttcttgattgtggcagACAAGGTCAAGGACTGGAAGAATGTGGTGATAGCATACGAGCCAGTGTGGGCGATTGGAACAGGAAAAGTTGCCACCCCTGCGCAGGCTCAGGAGGTCCA
                               | |    |   | | || | || | | || ||  | ||     ||     ||||  |    | |  |||| ||| |    || ||||  ||||| ||  | ||||| || ||||| ||||| |||||||| || || ||||| |||||||| ||||||||||||     
tctttatggcttttgtggtccattgtactgtgctgacatagaagtcttctcatttctccacccctaactttttgtcttttttactcgtcatatttttcagAGAAGATATCCGATTGGACCAATGTTGTTTTGGCATATGAACCAGTTTGGGCCATTGGAACCGGCAAGGTTGCAACCCCTGCTCAGGCTCAGGAG-----

upper sequence: EFJ31929 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: GRMZM2G030784_T01 (Zea mays), 3'ss of exon 5
-----------------------------gtttgggtttcatgtttttatcttgcatccaaagctcacactcaa-gcat--acttcttgattgt--ggcagACAAGGTCAAGGACTGGAAGAATGTGGTGATAGCATACGAGCCAGTGTGGGCGATTGGAACAGGAAAAGTTGCCACCCCTGCGCAGGCTCAGGAGGTCCA
                                   |||  |   ||| |      ||  |||  |||  || || | ||  | |   || ||||    |||| ||| ||||||||||||  || || ||  | || || || ||||| ||||| |||||||| || |||||||||||||| || |||||||||||      
gctggttttttagtgccctgctttggatttaccaagttgaaaaatttgacgccatatg-aaaattcaggctgaatggatcaaatggctgtttgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA-----

upper sequence: EFJ31929 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: GRMZM2G435244_T01 (Zea mays), 3'ss of exon 4
--------------------gtttgggttt--catgtt------tttatcttgcatccaaagctcacactcaa-gcat--acttcttgattgt--ggcagACAAGGTCAAGGACTGGAAGAATGTGGTGATAGCATACGAGCCAGTGTGGGCGATTGGAACAGGAAAAGTTGCCACCCCTGCGCAGGCTCAGGAGGTCCA
                     ||||| |||  || |||      |||  ||       |||  |||  || || | ||  | |   || ||||    |||| ||| ||||||||||||  || || ||  | || || || ||||| ||||| |||||||| || |||||||||||||| || |||||||||||      
tgctggtttttagtgccctgctttggatttaccaagttaaaaaatttgactccatatgaaaattcaggctgaatggatcaaatggatgtttgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA-----

upper sequence: EFJ31929 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: GRMZM2G370275_T01 (Zea mays), 3'ss of exon 4
-----------------------------gtttgggtttcatgtttttatcttgcatccaaagctcacactcaa-gcat--acttcttgattgt--ggcagACAAGGTCAAGGACTGGAAGAATGTGGTGATAGCATACGAGCCAGTGTGGGCGATTGGAACAGGAAAAGTTGCCACCCCTGCGCAGGCTCAGGAGGTCCA
                                   |||  |   ||| |      ||  |||  |||  || || | ||  | |   || ||||    |||| ||| ||||||||||||  || || ||  | || || || ||||| ||||| |||||||| || |||||||||||||| || |||||||||||      
tgctggtttttagtgccctgctttggatttaccaagttaaaaaatttgacgccatatg-aaaattcaggctgaatggatcaaatggctgtttgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA-----

upper sequence: EFJ31929 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: GRMZM2G018177_T01 (Zea mays), 3'ss of exon 5
-------------------------gtttgggttt--catgttttt--atcttgcatccaaagctcacactcaa-gcat--acttcttgattgt--ggcagACAAGGTCAAGGACTGGAAGAATGTGGTGATAGCATACGAGCCAGTGTGGGCGATTGGAACAGGAAAAGTTGCCACCCCTGCGCAGGCTCAGGAGGTCCA
                          ||||   ||  || ||||||  | | |  | | |||  |||  || || | ||  | |   || ||||    |||| ||| ||||||||||||  || || ||  | || || || ||||| ||||| |||||||| || ||||| |||||||| || |||||||||||      
gttcatgtgaacatttagtgccttgctttgaagttaccaagttttttgaccctata-cgaaaaatcaggctgaatggatcaaatggctgtttgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA-----

upper sequence: EFJ31929 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: GLYMA15G04290.2 (Glycine max), 3'ss of exon 5
---------------------------------------------------------------------------------------------------------------------------------gtttgggtttcatgtttttatcttgcatccaaagctcacactcaagcatacttcttgattgtg---gcagACAAGGTCAAGGACTGGAAGAATGTGGTGATAGCATACGAGCCAGTGTGGGCGATTGGAACAGGAAAAGTTGCCACCCCTGCGCAGGCTCAGGAGGTCCA
                                                                                                                                  |     | ||||   ||  | ||   |    |    | | |   ||  ||  ||| |||||    ||||  ||  |     | ||| | ||||| ||  | || ||||||||||| ||||| |||||||||||||| ||||| || ||||| |||||||| |||||   
gtaccttttttctccgtatatacaggtttaattttctgcgtattcattaagtcgtgtttttatctcagatttggaggtctttgctgttcttgtttaaaaaaaaaaaattcctaattgctttaacagattatcattatctcatcacttgctattttgttagcaatctatattttcgctgac--cttaattgtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGGCCATTGGAACAGGAAAGGTTGCTACTCCTGCTCAGGCTCAAGAGGTATG

upper sequence: EFJ31929 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: GLYMA15G04290.1 (Glycine max), 3'ss of exon 5
---------------------------------------------------------------------------------------------------------------------------------gtttgggtttcatgtttttatcttgcatccaaagctcacactcaagcatacttcttgattgtg---gcagACAAGGTCAAGGACTGGAAGAATGTGGTGATAGCATACGAGCCAGTGTGGGCGATTGGAACAGGAAAAGTTGCCACCCCTGCGCAGGCTCAGGAGGTCCA
                                                                                                                                  |     | ||||   ||  | ||   |    |    | | |   ||  ||  ||| |||||    ||||  ||  |     | ||| | ||||| ||  | || ||||||||||| ||||| |||||||||||||| ||||| || ||||| |||||||| |||     
gtaccttttttctccgtatatacaggtttaattttctgcgtattcattaagtcgtgtttttatctcagatttggaggtctttgctgttcttgtttaaaaaaaaaaaattcctaattgctttaacagattatcattatctcatcacttgctattttgttagcaatctatattttcgctgac--cttaattgtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGGCCATTGGAACAGGAAAGGTTGCTACTCCTGCTCAGGCTCAAGAG-----

upper sequence: EFJ31929 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: GLYMA13G41120.1 (Glycine max), 3'ss of exon 5
--------------------------------gtttgggtttcatgtttttatcttgcatccaaagctcacactcaagcatacttcttg-attgtggcagACAAGGTCAAGGACTGGAAGAATGTGGTGATAGCATACGAGCCAGTGTGGGCGATTGGAACAGGAAAAGTTGCCACCCCTGCGCAGGCTCAGGAGGTCCA
                                 ||    | ||||   ||  | ||   |    |    | | |   ||  || |   |  |  | ||||  ||  |     | ||| | ||||| ||  | || || |||||||| ||||| |||||||||||||| ||||| || ||||| |||||||| |||     
gttaaaaaaaactgttctaattgctttaacagattatcatctcatcacttgctattttgttagcaatctatattttcgctgaccttaagtgtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTATGAGCCAGTTTGGGCCATTGGAACAGGAAAGGTTGCAACTCCTGCTCAGGCTCAAGAG-----


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttttatcttgcatccaaagctcacactcaagcatacttcttgattgtggcagACAAGGTCAAGGACTGGAAGAATGTGGTGATAGCATACGAGCCAGTGTGGGCGATTGGAACAGGAAAAGTTGCCACCCCTGCGCAGGCTCAGGAGGTCCA
     ttatctt  TA-rich tract