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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttgtataaaagtgctttggtattatggttaagtttattcggttcccgggatgcagAAATTTAGTCTGCACTTGATGCTTAATGCAGATCGGGAATTCTTGGCTCAAAAGAGTGCACCACATCGTGACTTTTACAACGTTCGTAAGGTTGACACTC

Basic information

species Selaginella moellendorffii
transcript EFJ30909
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ30909 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: AT2G38280.2 (Arabidopsis thaliana), 3'ss of exon 6
------------------gtatgttgtataaaagtgctttggtattat--ggttaagtttattcggttcccgggatgcagAAATTTAGTCTGCACTTGATGCTTAATGCAGATCGGGAATTCTTGGCTCAAAAGAGTGCACCACATCGTGACTTTTACAACGTTCGTAAGGTTGACACTC
                  | |   || ||   | |      || |  |   |||||   |||     |     | | |||||||||| ||| || |||||||||||||| |||   |||||  | |||||||| ||||||||||||||||| ||||| |||||| | || || |||||||
gcaagagttttatttagagaagaatgaatgtcaataagcaagtttcgtcttgttaacagtatgtctattttttgtttcagAAATTTAATCTCCATTTGATGCTTAATGCGGATAAAGAATTTCTTGCTCAAAAAAGTGCACCACATCGTGATTTTTATAACGTTAGGAAAGTCGACACTC

upper sequence: EFJ30909 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: Vv01s0026g01480.t01 (Vitis vinifera), 3'ss of exon 6
-----------------------------gtatgttgtataaaagtgctttggtattatggttaagtttattcggttcccgggatgcagAAATTTAGTCTGCACTTGATGCTTAATGCAGATCGGGAATTCTTGGCTCAAAAGAGTGCACCACATCGTGACTTTTACAACGTTCGTAAGGTTGACACTC
                              ||  |||| | |   |  | | |   | || |||    |  |   |   |   || ||||||||  | || ||  || |  | |||||||||||||| ||  ||||||| ||||||||||||||||| || || |||||| || | |||||||| || |
gtggtgtttttcaaacttcctttctacttttacattgtgttat--taatattggcctgtgtttataacttataactgaacaatatacagAAATTCCGCCTTCATCTGTTAGTAAATGCAGATCGGGAGTTTCTGGCTCAGAAGAGTGCACCACATCGCGATTTCTACAACATTAGAAAGGTTGATACAC

upper sequence: EFJ30909 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: Vv08s0105g00570.t01 (Vitis vinifera), 3'ss of exon 6
--------------------------------------------------------------------------------------------gtatgttgtataaaagtgctttggt--attatggttaag---tttattcggttcccgggatgcagAAATTTAGTCTGCACTTGATGCTTAATGCAGATCGGGAATTCTTGGCTCAAAAGAGTGCACCACATCGTGACTTTTACAACGTTCGTAAGGTTGACACTC
                                                                                             | |  | | |  |  |  ||| ||  || |   |   |   ||  || |||| ||      |||||||| |  || ||  ||||||||||||| ||| | |||||| | || || || ||||||||||||||||||||||| || ||  | ||||| || || |
gtagatgctacttttctgtatttgattcacatatttgaattttttttttttgatttgtcatttattgaaatgtatgctctttttctttttcttttttctttttttacctctttttgtaaatgacaatctggtggttgttttggttaccaat---cagAAATTCAACCTTCATGTGATGCTTAATGCGGATAGAGAATTCCTTGCACAGAAAAGTGCACCACATCGTGACTTTTATAATGTCAGGAAGGTCGATACAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtataaaagtgctttggtattatggttaagtttattcggttcccgggatgcagAAATTTAGTCTGCACTTGATGCTTAATGCAGATCGGGAATTCTTGGCTCAAAAGAGTGCACCACATCGTGACTTTTACAACGTTCGTAAGGTTGACACTC
                                         ttccc  CT-rich tract
                           ttaagtttatt  TA-rich tract