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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagtattggtttttatactatctaaatacttaagttatttttttggttgtatgtcagAACGATCTACATGAGCTGTGGTCGCTTTTAAATCTACTCCTTCCTGAAGTCTTTGACAACAGTAAAGCTTTTCACGACTGGTTCTCAAAGCCATTCCAAA

Basic information

species Selaginella moellendorffii
transcript EFJ30636
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ30636 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: GLYMA09G39380.1 (Glycine max), 3'ss of exon 10
------------------------gtaagagtattggtttttatactatc-----taaata-cttaagttatttttttggttgtatgt---------cagAACGATCTACATGAGCTGTGGTCGCTTTTAAATCTACTCCTTCCTGAAGTCTTTGACAACAGTAAAGCTTTTCACGACTGGTTCTCAAAGCCATTCCAAA
                        |  | |  |||  | | |||  |        |||||| ||| |   | ||| ||  | || |           ||||| ||| |  | || |||||||||||||||||| |||| ||||| || || |||||||| |  ||||| ||| | || ||||||||||||||||| ||||
catgtaggtgtcacattgtcaattgataaatcatttatgtatatggtgcagtgaataaatatcttgataaaatttattaatggtgtaattttctctgcagAATGATTTGAAGGAACTGTGGTCGCTTTTAAATTTACTTCTTCCAGAGGTTTTTGACAATAAGAAAGCCTTTAATGATTGGTTCTCAAAGCCATTTCAAA

upper sequence: EFJ30636 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: GLYMA18G46930.1 (Glycine max), 3'ss of exon 8
----------------------------gtaagagtattggtttttatactatc-taaata-cttaagttatttttttggttgtatgt---------cagAACGATCTACATGAGCTGTGGTCGCTTTTAAATCTACTCCTTCCTGAAGTCTTTGACAACAGTAAAGCTTTTCACGACTGGTTCTCAAAGCCATTCCAAA
                            |  | |  |||  | |  ||  |    |||||| ||| |   | ||| ||  | ||             ||||| ||| |  | || |||||||||||||||||| |||| ||||| || || |||||||| |  ||||| ||| |||| ||||| ||||||||||| ||||
ttttaatgtaggtgtcacattgtcaattgataaatcatttatgtacatggtgcagtaaatatcttgataaaatttattaatggtgcaattttctctgcagAATGATTTGAAGGAACTGTGGTCGCTTTTAAATTTACTTCTTCCAGAGGTTTTTGACAATAAGAAAGCCTTTAACGATTGGTTTTCAAAGCCATTTCAAA

upper sequence: EFJ30636 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: Vv15s0046g02290.t01 (Vitis vinifera), 3'ss of exon 9
---------------------------------------gtaaga-gtattggtttttatactatctaaatacttaagttatttttttggttgtatgtcagAACGATCTACATGAGCTGTGGTCGCTTTTAAATCTACTCCTTCCTGAAGTCTTTGACAACAGTAAAGCTTTTCACGACTGGTTCTCAAAGCCATTCCAAA
                                       ||      | |  |||| | |  |   |  |   | || |    |  ||  |  | || ||||| || ||  | || || ||||||||| ||||||| || ||||||||||| ||||||||  | ||||||||||| || ||||| || || || || ||||
cataggaatagaactggctactggaaattttcattttttgtgctctatttcagtttgttttttgagttgaggttaaaatggactgatttttcttttg-cagAATGACCTGAAAGAACTCTGGTCGCTTCTAAATCTGCTTCTTCCTGAAGTGTTTGACAATCGAAAAGCTTTTCATGATTGGTTTTCGAAACCTTTTCAAA

upper sequence: EFJ30636 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: PP1S25_252V6.1 (Physcomitrella patens), 3'ss of exon 11
----------------------------------------------------------------gtaagagtattggtttttatactatctaaatacttaagttattttt-ttggttgtatgtcagAACGATCTACATGAGCTGTGGTCGCTTTTAAATCTACTCCTTCCTGAAGTCTTTGACAACAGTAAAGCTTTTCACGACTGGTTCTCAAAGCCATTCCAAA
                                                                ||  |   |      |  ||   || |    ||     | ||     |||||    |  ||||| ||||| |||||||||||||||||| | ||||| || || |||||||| |||||||||||||| || ||||| || ||||| || || || || || |
gtatatgtcatagtgctctttcgatctgtcttcttgacaattgggatctatgtctccatctaacgtttgtccaacatcatacatggcattttgtcaccgtgctgatgacggttggtatctttgcagAATGATCTTCATGAGCTGTGGTCGCTTCTTAATCTGCTACTCCCTGAAGTATTTGACAACAGTAAGGCATTTCATGAGTGGTTTTCGAAACCCTTTCAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtattggtttttatactatctaaatacttaagttatttttttggttgtatgtcagAACGATCTACATGAGCTGTGGTCGCTTTTAAATCTACTCCTTCCTGAAGTCTTTGACAACAGTAAAGCTTTTCACGACTGGTTCTCAAAGCCATTCCAAA
                 atctaaa  putative branch site (score: 3)
       tttttatactatctaa  TA-rich tract