1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtactcacagctgagaaagtctagcactacttttgcttattcttttcttccaatcttctagGCTTTACTGCACGAGGAAGCCAAGAACAAAGCCTTTGATATTGCTTCCAAGGCCGAAGAAGAAGGTTCGCCAACTACAGATTTTAAGAGCTTGTTCTCTG
species | Selaginella moellendorffii |
transcript | EFJ29885 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTAGCACCAAGAGCATCCCAAGAGAAGATGTGGCGGAAGTGTGCATCCAG GCTTTACTGCACGAGGAAGCCAAGAACAAAGCCTTTGATATTGCTTCCAAGEST: gi|169050407|gb|FE457590.1|FE457590
genomic: CTAGCACCAAGAGCATCCCAAGAGAAGATGTGGCGGAAGTGTGCATCCAGgtactcacag ... aatcttctagGCTTTACTGCACGAGGAAGCCAAGAACAAAGCCTTTGATATTGCTTCCAAG
EST: CTAGCACCAAGAGCATCCCAAGAGAAGATGTGGCGGAAGTGTGCATCCAG GCTTTACTGCACGAGGAAGCCAAGAACAAAGCCTTTGATATTGCTTCCAAGEST: gi|169058284|gb|FE465011.1|FE465011
genomic: CTAGCACCAAGAGCATCCCAAGAGAAGATGTGGCGGAAGTGTGCATCCAGgtactcacag ... aatcttctagGCTTTACTGCACGAGGAAGCCAAGAACAAAGCCTTTGATATTGCTTCCAAG
EST: CTAGCACCAAGAGCATCCCAAGAGAAGATGTGGCGGAAGTGTGCATCCAG GCTTTACTGCACGAGGAAGCCAAGAACAAAGCCTTTGATATTGCTTCCAAGEST: gi|169050408|gb|FE457591.1|FE457591
genomic: CTAGCACCAAGAGCATCCCAAGAGAAGATGTGGCGGAAGTGTGCATCCAGgtactcacag ... aatcttctagGCTTTACTGCACGAGGAAGCCAAGAACAAAGCCTTTGATATTGCTTCCAAG
EST: CTAGCACCAAGAGCATCCCAAGAGAAGATGTGGCGGAAGTGTGCATCCAG GCTTTACTGCACGAGGAAGCCAAGAACAAAGCCTTTGATATTGCTTC-AAGEST: gi|70670825|gb|DN839402.1|DN839402
genomic: CTAGCACCAAGAGCATCCCAAGAGAAGATGTGGCGGAAGTGTGCATCCAGgtactcacag ... aatcttctagGCTTTACTGCACGAGGAAGCCAAGAACAAAGCCTTTGATATTGCTTCCAAG
EST: CTAGCACCAAGAGCATCCCAAGAGAAGATGTGGCGGAAGTGTGCATCCAG GCTTTACTGCACGAGGAAGCCAAGAACAAAGCCTTTGATATTGCTTCCAAGEST: gi|169062142|gb|FE471034.1|FE471034
genomic: CTAGCACCAAGAGCATCCCAAGAGAAGATGTGGCGGAAGTGTGCATCCAGgtactcacag ... aatcttctagGCTTTACTGCACGAGGAAGCCAAGAACAAAGCCTTTGATATTGCTTCCAAG
EST: CTAGCACCAAGAGCATCCCAAGAGAAGATGTGGCGGAAGTGTGCATCCAG GCTTTACTGCACGAGGAAGCCAAGAACAAAGCCTTTGATATTGCTTCCAAGEST: gi|169062143|gb|FE471035.1|FE471035
genomic: CTAGCACCAAGAGCATCCCAAGAGAAGATGTGGCGGAAGTGTGCATCCAGgtactcacag ... aatcttctagGCTTTACTGCACGAGGAAGCCAAGAACAAAGCCTTTGATATTGCTTCCAAG
EST: CTAGCACCAAGAGCATCCCAAGAGAAGATGTGGCGGAAGTGTGCATCCAG GCTTTACTGCACGAGGAAGCCAAGAACAAAGCCTTTGATATTGCTTCCAAGEST: gi|169058285|gb|FE465012.1|FE465012
genomic: CTAGCACCAAGAGCATCCCAAGAGAAGATGTGGCGGAAGTGTGCATCCAGgtactcacag ... aatcttctagGCTTTACTGCACGAGGAAGCCAAGAACAAAGCCTTTGATATTGCTTCCAAG
EST: CTAGCACCAAGAGCATCCCAAGAGAAGATGTGGCGGAAGTGTGCATCCAG GCTTTACTGCACGAGGAAGCCAAGAACAAAGCCTTTGATATTGCTTCCAAGEST: gi|169038255|gb|FE443941.1|FE443941
genomic: CTAGCACCAAGAGCATCCCAAGAGAAGATGTGGCGGAAGTGTGCATCCAGgtactcacag ... aatcttctagGCTTTACTGCACGAGGAAGCCAAGAACAAAGCCTTTGATATTGCTTCCAAG
EST: CTAGCACCAAGAGCATCCCAAGAGAAGATGTGGCGGAAGTGTGCATCCAG GCTTTACTGCACGAGGAAGCCAAGAACAAAGCCTTTGATATTGCTTCCAAGEST: gi|169060860|gb|FE469255.1|FE469255
genomic: CTAGCACCAAGAGCATCCCAAGAGAAGATGTGGCGGAAGTGTGCATCCAGgtactcacag ... aatcttctagGCTTTACTGCACGAGGAAGCCAAGAACAAAGCCTTTGATATTGCTTCCAAG
EST: CTAGCACCAAGAGCATCCCAAGAGAAGATGTGGCGGAAGTGTGCATCCAG GCTTTACTGCACGAGGAAGCCAAGAACAAAGCCTTTGATATTGCTTCCAAGEST: gi|169104935|gb|FE509053.1|FE509053
genomic: CTAGCACCAAGAGCATCCCAAGAGAAGATGTGGCGGAAGTGTGCATCCAGgtactcacag ... aatcttctagGCTTTACTGCACGAGGAAGCCAAGAACAAAGCCTTTGATATTGCTTCCAAG
EST: CTAGCACCAAGAGCATCCCAAGAGAAGATGTGGCGGAAGTGTGCATCCAG GCTTTACTGCACGAGGAAGCCAAGAACAAAGCCTTTGATATTGCTTCCAAGEST: gi|169104934|gb|FE509052.1|FE509052
genomic: CTAGCACCAAGAGCATCCCAAGAGAAGATGTGGCGGAAGTGTGCATCCAGgtactcacag ... aatcttctagGCTTTACTGCACGAGGAAGCCAAGAACAAAGCCTTTGATATTGCTTCCAAG
EST: CTAGCACCAAGAGCATCCCAAGAGAAGATGTGGCGGAAGTGTGCATCCAG GCTTTACTGCACGAGGAAGCCAAGAACAAAGCCTTTGATATTGCTTCCAAGEST: gi|169107965|gb|FE513794.1|FE513794
genomic: CTAGCACCAAGAGCATCCCAAGAGAAGATGTGGCGGAAGTGTGCATCCAGgtactcacag ... aatcttctagGCTTTACTGCACGAGGAAGCCAAGAACAAAGCCTTTGATATTGCTTCCAAG
EST: CTAGCACCAAGAGCATCCCAAGAGAAGATGTGGCGGAAGTGTGCATCCAG GCTTTACTGCACGAGGAAGCCAAGAACAA-GCCTTTGATATTGCTTCCA
genomic: CTAGCACCAAGAGCATCCCAAGAGAAGATGTGGCGGAAGTGTGCATCCAGgtactcacag ... aatcttctagGCTTTACTGCACGAGGAAGCCAAGAACAAAGCCTTTGATATTGCTTCCA
acagctgagaaagtctagcactacttttgcttattcttttcttccaatcttctagGCTTTACTGCACGAGGAAGCCAAGAACAAAGCCTTTGATATTGCTTCCAAGGCCGAAGAAGAAGGTTCGCCAACTACAGATTTTAAGAGCTTGTTCTCTG
tactcac putative branch site (score: 118)
cttttgcttattcttt putative PPT
ttattctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactcacagctgagaaagtctagcactacttttgcttattcttttcttccaatcttctagGCTTTACTGCACGAGGAAGCCAAGAACAAAGCCTTTGATATTGCTTCCAAGGCCGAAGAAGAAGGTTCGCCAACTACAGATTTTAAGAGCTTGTTCTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT