1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagctttcattcgtttctcttttcgtactttcttctcacagtttgtgtgtgtctgtgcttgtagGATTTAGAACGCGAGTCCAGTTTTACGACTACCTGGATCTTCCTCAAGCATGCTACTATATGTCCGAGATCTTGGATTGTGCAGACGGGAAGCCATTGTT
species | Selaginella moellendorffii |
transcript | EFJ29865 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCTTGTGCTCAAGCCGGGCTGGCACACCAAGCATGCCATTCTTCCAGCAG GATTTAGAACGCGAGTCCAGTTTTACGACTACCTGGATCTTCCTCAAGCATEST: gi|169032758|gb|FE438292.1|FE438292
genomic: GCTTGTGCTCAAGCCGGGCTGGCACACCAAGCATGCCATTCTTCCAGCAGgtaagctttc ... gtgcttgtagGATTTAGAACGCGAGTCCAGTTTTACGACTACCTGGATCTTCCTCAAGCAT
EST: GCTTGTGCTCAAGCCGGGCTGGCACACCAAGCATGCCATTCTTCCAGCAG GATTTAGAACGCGAGTCCAGTTTTACGACTACCTGGATCTTCCTCAAGCATEST: gi|169032757|gb|FE438291.1|FE438291
genomic: GCTTGTGCTCAAGCCGGGCTGGCACACCAAGCATGCCATTCTTCCAGCAGgtaagctttc ... gtgcttgtagGATTTAGAACGCGAGTCCAGTTTTACGACTACCTGGATCTTCCTCAAGCAT
EST: GCTTGTGCTCAAGCCGGGCTGGCACACCAAGCATGCCATTCTTCCAGCAG GATTTAGAACGCGAGTCCAGTTTTACGACTACCTGGATCTTCCTCAAGCATEST: gi|169108202|gb|FE512575.1|FE512575
genomic: GCTTGTGCTCAAGCCGGGCTGGCACACCAAGCATGCCATTCTTCCAGCAGgtaagctttc ... gtgcttgtagGATTTAGAACGCGAGTCCAGTTTTACGACTACCTGGATCTTCCTCAAGCAT
EST: GCTTGTGCTCAAGCCGGGCTGGCACACCAAGCATGCCATTCTTCCAGCAG GATTTAGAACGCGAGTCCAGTTTTACGACTACCTGGATCTTCCTCAAGCAT
genomic: GCTTGTGCTCAAGCCGGGCTGGCACACCAAGCATGCCATTCTTCCAGCAGgtaagctttc ... gtgcttgtagGATTTAGAACGCGAGTCCAGTTTTACGACTACCTGGATCTTCCTCAAGCAT
ttcgtttctcttttcgtactttcttctcacagtttgtgtgtgtctgtgcttgtagGATTTAGAACGCGAGTCCAGTTTTACGACTACCTGGATCTTCCTCAAGCATGCTACTATATGTCCGAGATCTTGGATTGTGCAGACGGGAAGCCATTGTT
ttctcac putative branch site (score: 14)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctttcattcgtttctcttttcgtactttcttctcacagtttgtgtgtgtctgtgcttgtagGATTTAGAACGCGAGTCCAGTTTTACGACTACCTGGATCTTCCTCAAGCATGCTACTATATGTCCGAGATCTTGGATTGTGCAGACGGGAAGCCATTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC