1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagcaaagacttgtcttcttttgtaatccatctgtgctaacgcgcgtccatcgacagGCATTCTTCTCTTGGACGTTGCGCCCCTTACTCTGGGTATCGAGACCGTTGGTGGAGTGATGACCAAGCTGATCCCCAGGAACACTGTCATTCCGACCAA
species | Selaginella moellendorffii |
transcript | EFJ29073 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGCTGTCCAGGGCGGTATCTTGAGCGGTGAAGGCGGCGACGATGTTAAAG GCATTCTTCTCTTGGACGTTGCGCCCCTTACTCTGGGTATCGAGACCGTTGEST: gi|169080680|gb|FE487188.1|FE487188
genomic: TGCTGTCCAGGGCGGTATCTTGAGCGGTGAAGGCGGCGACGATGTTAAAGgtaagcaaag ... ccatcgacagGCATTCTTCTCTTGGACGTTGCGCCCCTTACTCTGGGTATCGAGACCGTTG
EST: TGCTGTCCAGGGCGGTATCTTGAGCGGTGAAGGCGGCGACGATGTTAAAG GCATTCTTCTCTTGGACGTTGCGCCCCTTACTCTGGGTATCGAGACCGTTGEST: gi|169115292|gb|FE517008.1|FE517008
genomic: TGCTGTCCAGGGCGGTATCTTGAGCGGTGAAGGCGGCGACGATGTTAAAGgtaagcaaag ... ccatcgacagGCATTCTTCTCTTGGACGTTGCGCCCCTTACTCTGGGTATCGAGACCGTTG
EST: TGCTGTCCAGGGCGGTATCTTGAGCGGTGAAGGCGGCGACGATGTTAAAG GCATTCTTCTCTTGGACGTTGCGCCCCTTACTCTGGGTATCGAGACCGTTGEST: gi|169079294|gb|FE490183.1|FE490183
genomic: TGCTGTCCAGGGCGGTATCTTGAGCGGTGAAGGCGGCGACGATGTTAAAGgtaagcaaag ... ccatcgacagGCATTCTTCTCTTGGACGTTGCGCCCCTTACTCTGGGTATCGAGACCGTTG
EST: TGCTGTCCAGGGCGGTATCTTGAGCGGTGAAGGCGGCGACGATGTTAAAG GCATTCTTCTCTTGGACGTTGCGCCCCTTACTCTGGGTATCGAGACCGTTGEST: gi|169044229|gb|FE452959.1|FE452959
genomic: TGCTGTCCAGGGCGGTATCTTGAGCGGTGAAGGCGGCGACGATGTTAAAGgtaagcaaag ... ccatcgacagGCATTCTTCTCTTGGACGTTGCGCCCCTTACTCTGGGTATCGAGACCGTTG
EST: TGCTGTCCAGGGCGGTATCTTGAGCGGTGAAGGCGGCGACGATGTTAAAG GCATTCTTCTCTTGGACGTTGCGCCCCTTACTCTGGGTATCGAGACCGTTGEST: gi|169082521|gb|FE490045.1|FE490045
genomic: TGCTGTCCAGGGCGGTATCTTGAGCGGTGAAGGCGGCGACGATGTTAAAGgtaagcaaag ... ccatcgacagGCATTCTTCTCTTGGACGTTGCGCCCCTTACTCTGGGTATCGAGACCGTTG
EST: TGCTGTCCAGGGCGGTATCTTGAGCGGTGAAGGCGGCGACGATGTTAAAG GCATTCTTCTCTTGGACGTTGCGCCCCTTACTCTGGGTATCGAGACCGTTGEST: gi|169021566|gb|FE432111.1|FE432111
genomic: TGCTGTCCAGGGCGGTATCTTGAGCGGTGAAGGCGGCGACGATGTTAAAGgtaagcaaag ... ccatcgacagGCATTCTTCTCTTGGACGTTGCGCCCCTTACTCTGGGTATCGAGACCGTTG
EST: TGCTGTCCAGGGCGGTATCTTGAGCGGTGAAGGCGGCGACGATGTTAAAG GCATTCTTCTCTTGGACGTTGCGCCCCTTACTCTGGGTATCGAGACCGTTGEST: gi|169037137|gb|FE444422.1|FE444422
genomic: TGCTGTCCAGGGCGGTATCTTGAGCGGTGAAGGCGGCGACGATGTTAAAGgtaagcaaag ... ccatcgacagGCATTCTTCTCTTGGACGTTGCGCCCCTTACTCTGGGTATCGAGACCGTTG
EST: TGCTGTCCAGGGCGGTATCTTGAGCGGTGAAGGCGGCGACGATGTTAAAG GCATTCTTCTCTTGGACGTTGCGCCCCTTACTCTGGGTATCGAGACCGTTGEST: gi|169068925|gb|FE477266.1|FE477266
genomic: TGCTGTCCAGGGCGGTATCTTGAGCGGTGAAGGCGGCGACGATGTTAAAGgtaagcaaag ... ccatcgacagGCATTCTTCTCTTGGACGTTGCGCCCCTTACTCTGGGTATCGAGACCGTTG
EST: TGCTGTCCAGGGCGGTATCTTGAGCGGTGAAGGCGGCGACGATGTTAAAG GCATTCTTCTCTTGGACGTTGCGCCCCTTACTCTGGGTATCGAGACCGTTGEST: gi|169029068|gb|FE437571.1|FE437571
genomic: TGCTGTCCAGGGCGGTATCTTGAGCGGTGAAGGCGGCGACGATGTTAAAGgtaagcaaag ... ccatcgacagGCATTCTTCTCTTGGACGTTGCGCCCCTTACTCTGGGTATCGAGACCGTTG
EST: TGCTGTCCAGGGCGGTATCTTGAGCGGTGAAGGCGGCGACGATGTTAAAG GCATTCTTCTCTTGGACGTTGCGCCCCTTACTCTGGGTATCGAGACCGTTG
genomic: TGCTGTCCAGGGCGGTATCTTGAGCGGTGAAGGCGGCGACGATGTTAAAGgtaagcaaag ... ccatcgacagGCATTCTTCTCTTGGACGTTGCGCCCCTTACTCTGGGTATCGAGACCGTTG
gcaaagacttgtcttcttttgtaatccatctgtgctaacgcgcgtccatcgacagGCATTCTTCTCTTGGACGTTGCGCCCCTTACTCTGGGTATCGAGACCGTTGGTGGAGTGATGACCAAGCTGATCCCCAGGAACACTGTCATTCCGACCAA
tgctaac putative branch site (score: 33)
ttttgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcaaagacttgtcttcttttgtaatccatctgtgctaacgcgcgtccatcgacagGCATTCTTCTCTTGGACGTTGCGCCCCTTACTCTGGGTATCGAGACCGTTGGTGGAGTGATGACCAAGCTGATCCCCAGGAACACTGTCATTCCGACCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT