1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaagtggaaatctgatttcgtctgtggcgaaggatttgaaactttatcattttgtccagGCTCTTGACAAAACGGCCAACGCTTTTGCTCTTGCAACAAGTCCGGTTGTGCAAGCTCTCATTGATCCCGATGGTGCAATGCGGACTATCAGAAACTTAG
species | Selaginella moellendorffii |
transcript | EFJ28321 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCGCTCCTTTGCATGGAATCAAAGCTTTTCTCACGACAAATCAGCTCAAC GCTCTTGACAAAACGGCCAACGCTTTTGCTCEST: gi|169025514|gb|FE434984.1|FE434984
genomic: GCGCTCCTTTGCATGGAATCAAAGCTTTTCTCACGACAAATCAGCTCAACgtaagtggaa ... ttttgtccagGCTCTTGACAAAACGGCCAACGCTTTTGCTC
EST: GCGCTCCTTTGCATGGAATCAAAGCTTTTCTCACGACAAATCAGCTCAAC GCTCTTGACAAAACGGCCAACGCTTTTGCTCTTGCAACAAGTCCGGTTGTG
genomic: GCGCTCCTTTGCATGGAATCAAAGCTTTTCTCACGACAAATCAGCTCAACgtaagtggaa ... ttttgtccagGCTCTTGACAAAACGGCCAACGCTTTTGCTCTTGCAACAAGTCCGGTTGTG
tggaaatctgatttcgtctgtggcgaaggatttgaaactttatcattttgtccagGCTCTTGACAAAACGGCCAACGCTTTTGCTCTTGCAACAAGTCCGGTTGTGCAAGCTCTCATTGATCCCGATGGTGCAATGCGGACTATCAGAAACTTAG
atctgat putative branch site (score: 5)
ttttgtcc putative PPT
aaactttatcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtggaaatctgatttcgtctgtggcgaaggatttgaaactttatcattttgtccagGCTCTTGACAAAACGGCCAACGCTTTTGCTCTTGCAACAAGTCCGGTTGTGCAAGCTCTCATTGATCCCGATGGTGCAATGCGGACTATCAGAAACTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT