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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgttctttcttttatggagctgattgtataaatcactcctacttggttgcaacagGATGTTGGCCAGGCAATTCTCGAGAGCTACTCGAGAGTTTTGGAGAGTCTGGCATACAGCATTCTCTCTCGGATTGACGACGTACTGTACATAGCGGACA

Basic information

species Selaginella moellendorffii
transcript EFJ28174
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ28174 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: Vv15s0046g02530.t01 (Vitis vinifera), 3'ss of exon 6
---------------------------gtctgttctttcttttatggagctgattgta--taaatcactcctacttggttgcaacagGATGTTGGCCAGGCAATTCTCGAGAGCTACTCGAGAGTTTTGGAGAGTCTGGCATACAGCATTCTCTCTCGGATTGACGACGTACTGTACATAGCGGACA
                             ||    || |    |         | | |  | | | |     |  |  |||   |||||||| || ||||| || || ||||||||||| ||||| ||||| ||||| |||| ||||||| |  || ||||||| || ||| |  |   ||     |
gtgagcaactgcatccaaattactaaaagctaaaattccaggaaaatcatgagtagaaaatgactgaaaggaaaatatttgttgcagGATGTCGGGCAGGCGATCCTGGAGAGCTACTCTAGAGTGTTGGAAAGTCTAGCATTCAGCATTGTTGCTTGGATTGAAGATGTATTACATGAAGACAGAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttctttcttttatggagctgattgtataaatcactcctacttggttgcaacagGATGTTGGCCAGGCAATTCTCGAGAGCTACTCGAGAGTTTTGGAGAGTCTGGCATACAGCATTCTCTCTCGGATTGACGACGTACTGTACATAGCGGACA
                 agctgat  putative branch site (score: 4)
                      attgtataaat  TA-rich tract