1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
gtacgttctcggctcttaaatatttgctacatatctttcatgcctttgttaaagcagATTCTCGAAAAGTGACCATCCTCACGAGCAGACAATGGACATTTCCGAGCCCGAGCTTATCACATCAACTATTGAAGAAGAAGAGACTCTAGAGAGTCTT
species | Selaginella moellendorffii |
transcript | EFJ27458 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAAACTGGTAAATCGAAGAGACGATCATCAGGCTTTTTCAATCTCTTGAG ATTCTCGAAAAGTGACCATCCTCACGAGCAGACAATGGACATTTCCGAGCCEST: gi|169095351|gb|FE496742.1|FE496742
genomic: AAAACTGGTAAATCGAAGAGACGATCATCAGGCTTTTTCAATCTCTTGAGgtacgttctc ... gttaaagcagATTCTCGAAAAGTGACCATCCTCACGAGCAGACAATGGACATTTCCGAGCC
EST: AAAACTGGTAAATCGAAGAGACGATCATCAGGCTTTTTCAATCTCTTGAG ATTCTCGAAAAGTGACCATCCTCACGAGCAGACAATGGACATTTCCGAGCCEST: gi|169080014|gb|FE487900.1|FE487900
genomic: AAAACTGGTAAATCGAAGAGACGATCATCAGGCTTTTTCAATCTCTTGAGgtacgttctc ... gttaaagcagATTCTCGAAAAGTGACCATCCTCACGAGCAGACAATGGACATTTCCGAGCC
EST: AAAACTGGTAAATCGAAGAGACGATCATCAGGCTTTTTCAATCTCTTGAG ATTCTCGAAAAGTGACCATCCTCACGAGCAGACAATGGACATTTCCGAGCCEST: gi|169086929|gb|FE496152.1|FE496152
genomic: AAAACTGGTAAATCGAAGAGACGATCATCAGGCTTTTTCAATCTCTTGAGgtacgttctc ... gttaaagcagATTCTCGAAAAGTGACCATCCTCACGAGCAGACAATGGACATTTCCGAGCC
EST: AAAACTGGTAAATCGAAGAGACGATCATCAGGCTTTTTCAATCTCTTGAG ATTCTCGAAAAGTGACCATCCTCACGAGCAGACAATGGACATTTCCGAGCCEST: gi|169020233|gb|FE430323.1|FE430323
genomic: AAAACTGGTAAATCGAAGAGACGATCATCAGGCTTTTTCAATCTCTTGAGgtacgttctc ... gttaaagcagATTCTCGAAAAGTGACCATCCTCACGAGCAGACAATGGACATTTCCGAGCC
EST: AAAACTGGTAAATCGAAGAGACGATCATCAGGCTTTTTCAATCTCTTGAG ATTCTCGAAAAGTGACCATCCTCACGAGCAGACAATGGACATTTCCGAGCCEST: gi|169030748|gb|FE440863.1|FE440863
genomic: AAAACTGGTAAATCGAAGAGACGATCATCAGGCTTTTTCAATCTCTTGAGgtacgttctc ... gttaaagcagATTCTCGAAAAGTGACCATCCTCACGAGCAGACAATGGACATTTCCGAGCC
EST: AAAACTGGTAAATCGAAGAGACGATCATCAGGCTTTTTCAATCTCTTGAG ATTCTCGAAAAGTGACCATCCTCACGAGCAGACAATGGACATTTCCGAGCC
genomic: AAAACTGGTAAATCGAAGAGACGATCATCAGGCTTTTTCAATCTCTTGAGgtacgttctc ... gttaaagcagATTCTCGAAAAGTGACCATCCTCACGAGCAGACAATGGACATTTCCGAGCC
acgttctcggctcttaaatatttgctacatatctttcatgcctttgttaaagcagATTCTCGAAAAGTGACCATCCTCACGAGCAGACAATGGACATTTCCGAGCCCGAGCTTATCACATCAACTATTGAAGAAGAAGAGACTCTAGAGAGTCTT
cctttgtt CT-rich tract
ttaaatatttgcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgttctcggctcttaaatatttgctacatatctttcatgcctttgttaaagcagATTCTCGAAAAGTGACCATCCTCACGAGCAGACAATGGACATTTCCGAGCCCGAGCTTATCACATCAACTATTGAAGAAGAAGAGACTCTAGAGAGTCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA