1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagttcctcctcggaccttaaaccgtgcatccaaactcactagtgtcgtgtcgtgtcgtgaactcctaaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGACGCTGCAGAGAAAGCGCGATCGCATTGCCGAGAAGAAGAGGCGCGTCCA
species | Selaginella moellendorffii |
transcript | EFJ26393 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCG GCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGAEST: gi|169102757|gb|FE503965.1|FE503965
genomic: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... taaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
EST: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCG GCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGAEST: gi|169093638|gb|FE495789.1|FE495789
genomic: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... taaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
EST: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCG GCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGAEST: gi|70670389|gb|DN838966.1|DN838966
genomic: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... taaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
EST: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCG GCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGAEST: gi|169055041|gb|FE462956.1|FE462956
genomic: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... taaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
EST: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCG GCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGAEST: gi|169039410|gb|FE449124.1|FE449124
genomic: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... taaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
EST: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCG GCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGAEST: gi|169076015|gb|FE480997.1|FE480997
genomic: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... taaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
EST: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCG GCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGAEST: gi|169061908|gb|FE470202.1|FE470202
genomic: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... taaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
EST: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCG GCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGAEST: gi|169093672|gb|FE492378.1|FE492378
genomic: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... taaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
EST: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCG GCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
genomic: TGTCCGCAAGTACGTGAACACGTACCGCCGGAATTTCACGGCCCCCTCCGgtaagttcct ... taaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGA
accgtgcatccaaactcactagtgtcgtgtcgtgtcgtgaactcctaaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGACGCTGCAGAGAAAGCGCGATCGCATTGCCGAGAAGAAGAGGCGCGTCCA
tcctaaa putative branch site (score: 79)
ctcct CT-rich tract
taaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttcctcctcggaccttaaaccgtgcatccaaactcactagtgtcgtgtcgtgtcgtgaactcctaaaaaccagGCAAGAAGCGCAGCAAGGCCCCCAAGATCCAGAGGCTGGTTACTCCGCGGACGCTGCAGAGAAAGCGCGATCGCATTGCCGAGAAGAAGAGGCGCGTCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG