1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtacgagagtatgctatgccattgtgtgacgagattaagttttgtttctttcactgttgcagATTAGGCCAGACCGCCAGACGCTCTACTGGAGCGCAACATGGCCTAAAGATGTCGAGCAGCTGGCTAATCAATTTTTGCATGATCCCTACAAG
species | Selaginella moellendorffii |
transcript | EFJ26152 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAATGCTGGACATGGGCTTTGAGCCTCANATCAGANAGATAGTTGGACAG ATTAGGCCAGACCGCCAGACGCTTTACTGGAGCGCAACATGGCCTANAGATEST: gi|169046771|gb|FE455851.1|FE455851
genomic: GAATGCTGGACATGGGCTTTGAGCCTCAAATCAGAAAGATAGTTGGACAGgtacgagagt ... actgttgcagATTAGGCCAGACCGCCAGACGCTCTACTGGAGCGCAACATGGCCTAAAGAT
EST: GAATGCTGGACATGGGCTTTGAGCCTCAAATCAGAAAGATAGTTGGACAG ATTAGGCCAGACCGCCAGACGCTCTACTGGAGCGCAACATGGCCTAAAGATEST: gi|169095644|gb|FE497009.1|FE497009
genomic: GAATGCTGGACATGGGCTTTGAGCCTCAAATCAGAAAGATAGTTGGACAGgtacgagagt ... actgttgcagATTAGGCCAGACCGCCAGACGCTCTACTGGAGCGCAACATGGCCTAAAGAT
EST: GAATGCTGGACATGGGCTTTGAGCCTCAAATCAGAAAGATAGTTGGACAG ATTAGGCCAGACCGCCAGACGCTTTACTGGAGCGCAACATGGCCTAAAGATEST: gi|169025386|gb|FE436000.1|FE436000
genomic: GAATGCTGGACATGGGCTTTGAGCCTCAAATCAGAAAGATAGTTGGACAGgtacgagagt ... actgttgcagATTAGGCCAGACCGCCAGACGCTCTACTGGAGCGCAACATGGCCTAAAGAT
EST: GAATGCTGGACATGGGCTTTGAGCCTCNAATCAGAAAGATAGTTGGACAG ATTAGGCCAGACCGCCAGACGCTCTACTGGAGCGCAACATGGCCTAAAGATEST: gi|169111640|gb|FE513984.1|FE513984
genomic: GAATGCTGGACATGGGCTTTGAGCCTCAAATCAGAAAGATAGTTGGACAGgtacgagagt ... actgttgcagATTAGGCCAGACCGCCAGACGCTCTACTGGAGCGCAACATGGCCTAAAGAT
EST: GAATGCTGGACATGGGCTTTGAGCCTCAAATCAGAAAGATAGTTGGACAG ATTAGGCCAGACCGCCAGACGCTCTACTGGAGCGCAACATGGCCTAAAGAT
genomic: GAATGCTGGACATGGGCTTTGAGCCTCAAATCAGAAAGATAGTTGGACAGgtacgagagt ... actgttgcagATTAGGCCAGACCGCCAGACGCTCTACTGGAGCGCAACATGGCCTAAAGAT
agtatgctatgccattgtgtgacgagattaagttttgtttctttcactgttgcagATTAGGCCAGACCGCCAGACGCTCTACTGGAGCGCAACATGGCCTAAAGATGTCGAGCAGCTGGCTAATCAATTTTTGCATGATCCCTACAAG
ttttgtttctttcact CT-rich tract
attaagttttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgagagtatgctatgccattgtgtgacgagattaagttttgtttctttcactgttgcagATTAGGCCAGACCGCCAGACGCTCTACTGGAGCGCAACATGGCCTAAAGATGTCGAGCAGCTGGCTAATCAATTTTTGCATGATCCCTACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG