1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaatggctctgttctatctcttttgcttttttctaacatataagttctgaacagATTTAGCCATTCTTCGGAAAGAAAGCAACAAGAATGCTGGTTTTGTTTGGCGAGCCCAAACGTCGAGACACATCTGGTTGCGAGCGTTGGAGATCATTGC
species | Selaginella moellendorffii |
transcript | EFJ26038 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGTTTCAACTTTTTCAAGAAAGGAAGCTGTGAGAAGGGAGATGACTGCAG ATTTAGCCATTCTTTGGAAAGAAAGCAACAAGAATGCTGGTTTTGTTTGGCEST: gi|169020154|gb|FE431089.1|FE431089
genomic: TGTTTCAACTTTTTCAAGAAAGGAAGCTGTGAGAAGGGAGATGACTGCAGgtaatggctc ... ttctgaacagATTTAGCCATTCTTCGGAAAGAAAGCAACAAGAATGCTGGTTTTGTTTGGC
EST: TTCAACTTTTTCAAGAAAGGAAGCTGTGAGAAGGGAGATGACTGCAG ATTTAGCCA-TCTTCGGAAAGAAAGCAACAAGAATGCTGGTTTTGTTTGGCEST: gi|169070784|gb|FE478878.1|FE478878
genomic: TTCAACTTTTTCAAGAAAGGAAGCTGTGAGAAGGGAGATGACTGCAGgtaatggctc ... ttctgaacagATTTAGCCATTCTTCGGAAAGAAAGCAACAAGAATGCTGGTTTTGTTTGGC
EST: TGTTTCAACTTTTTCAAGAAAGGAAGCTGTGAGAAGGGAGATGACTGCAG ATTTAGCCATTCTTCGGAAAGAAAGCAACAAGAATGCTGGTTTTGTTTGGC
genomic: TGTTTCAACTTTTTCAAGAAAGGAAGCTGTGAGAAGGGAGATGACTGCAGgtaatggctc ... ttctgaacagATTTAGCCATTCTTCGGAAAGAAAGCAACAAGAATGCTGGTTTTGTTTGGC
gtaatggctctgttctatctcttttgcttttttctaacatataagttctgaacagATTTAGCCATTCTTCGGAAAGAAAGCAACAAGAATGCTGGTTTTGTTTGGCGAGCCCAAACGTCGAGACACATCTGGTTGCGAGCGTTGGAGATCATTGC
ttctaac putative branch site (score: 1)
ttttttctaacatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatggctctgttctatctcttttgcttttttctaacatataagttctgaacagATTTAGCCATTCTTCGGAAAGAAAGCAACAAGAATGCTGGTTTTGTTTGGCGAGCCCAAACGTCGAGACACATCTGGTTGCGAGCGTTGGAGATCATTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA