1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtcagtcactcggcttcttcgaaagcttgtcgagaaacttttgttttcttcttcttctcctttccagCGGCTCATGCAATGCATTGGGGTCCCGGACAAGGCGCTAGAACAGCGTTTGAAGACGCACACCAGCTATCAGAGCTCCTGGCAGCAGCAATAGCAACCGG
species | Selaginella moellendorffii |
transcript | EFJ26033 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACTCGAGTCTTGGAGCGATCTTGACGGGCGTGTTCTTCTCATTGGAGACG CGGCTCATGCAATGCATTGGGGTCCCGGACAAGGCGCTAGAACAGCGTTTGEST: gi|169095279|gb|FE496709.1|FE496709
genomic: ACTCGAGTCTTGGAGCGATCTTGACGGGCGTGTTCTTCTCATTGGAGACGgtcagtcact ... tcctttccagCGGCTCATGCAATGCATTGGGGTCCCGGACAAGGCGCTAGAACAGCGTTTG
EST: ACTCGAGTCTTGGAGCGATCTTGACGGGCGCGTTCTTCTCATTGGAGACG CGGCTCATGCGATGCATTGGGGTCCCGGACAAGGCGCTAGAACAGCGTTTG
genomic: ACTCGAGTCTTGGAGCGATCTTGACGGGCGTGTTCTTCTCATTGGAGACGgtcagtcact ... tcctttccagCGGCTCATGCAATGCATTGGGGTCCCGGACAAGGCGCTAGAACAGCGTTTG
gcttcttcgaaagcttgtcgagaaacttttgttttcttcttcttctcctttccagCGGCTCATGCAATGCATTGGGGTCCCGGACAAGGCGCTAGAACAGCGTTTGAAGACGCACACCAGCTATCAGAGCTCCTGGCAGCAGCAATAGCAACCGG
cttttgttttcttctt CT-rich tract
ttttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtcactcggcttcttcgaaagcttgtcgagaaacttttgttttcttcttcttctcctttccagCGGCTCATGCAATGCATTGGGGTCCCGGACAAGGCGCTAGAACAGCGTTTGAAGACGCACACCAGCTATCAGAGCTCCTGGCAGCAGCAATAGCAACCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT