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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttttcttatgcgcgcagtttgtgtggcgtgtgacttatgtcagtcgtatggtggttggcgttgctcccgcagAAGCACAAGGACTCTGGTGCAGACATCACCATCTCATGTGTTCCTGTGGACGAGAG

Basic information

species Selaginella moellendorffii
transcript EFJ25399
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169077503|gb|FE485948.1|FE485948
EST:     TTCTCTCCGGTGATCACCTCTACCGCATGGACTACATGGACTTTGTCCAG                         AAGCACAAGGACTCTGGTGCAGACATCACCATCTCATGTGTTCCTGTGGAC
genomic: TTCTCTCCGGTGATCACCTCTACCGCATGGACTACATGGACTTTGTCCAGgtatgttttc ... gctcccgcagAAGCACAAGGACTCTGGTGCAGACATCACCATCTCATGTGTTCCTGTGGAC
EST: gi|169030615|gb|FE438741.1|FE438741
EST:     TTCTCTCCGGTGATCACCTCTACCGCATGGACTACATGGACTTTGTCCAG                         AAAGCACA-GGACTCTGGTGCAGACATCACCATCTCATGTGTTCCTGTGGA
genomic: TTCTCTCCGGTGATCACCTCTACCGCATGGACTACATGGACTTTGTCCAGgtatgttttc ... gctcccgcagAA-GCACAAGGACTCTGGTGCAGACATCACCATCTCATGTGTTCCTGTGGA
EST: gi|169112864|gb|FE514616.1|FE514616
EST:     TTCTCTCCGGTGATCACCTCTACCGCATGGACTACATGGACTTTGTCCAG                         AAGCACAAGGACTCTGGTGCAGACATCACCATCTCATGTGTTCCTGTGGAC
genomic: TTCTCTCCGGTGATCACCTCTACCGCATGGACTACATGGACTTTGTCCAGgtatgttttc ... gctcccgcagAAGCACAAGGACTCTGGTGCAGACATCACCATCTCATGTGTTCCTGTGGAC
EST: gi|169071157|gb|FE478354.1|FE478354
EST:     TTCTCTCCGGTGATCACCTCTACCGCATGGACTACATGGACTTTGTCCAG                         AAGCACAAGGACTCTGGTGCAGACATCACCATCTCATGTGTTCCTGTGGAC
genomic: TTCTCTCCGGTGATCACCTCTACCGCATGGACTACATGGACTTTGTCCAGgtatgttttc ... gctcccgcagAAGCACAAGGACTCTGGTGCAGACATCACCATCTCATGTGTTCCTGTGGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtgtggcgtgtgacttatgtcagtcgtatggtggttggcgttgctcccgcagAAGCACAAGGACTCTGGTGCAGACATCACCATCTCATGTGTTCCTGTGGACGAGAG
                                           ttgctccc  CT-rich tract