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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatgctacgggattgagatgcatgtttcttttaaccgctaattcgtttttccttctcacttgttttcttacaaatttttttttccagGAGAATCCCCGATAGACCAAAAGATCGTGCCAAGTGGGATGGAATCGCGGATGTGGTGTCTGCGCTGTCAATTCCTGTCATAGCTAATGGGGATGTTTTC

Basic information

species Selaginella moellendorffii
transcript EFJ24692
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ24692 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: LOC_Os04g44890.1 (Oryza sativa), 3'ss of exon 5
----gtgatgctacgggattgagatgcatgtttcttttaaccgctaattcgtttttccttctcacttgttttcttaca-----aatttttttt----tccagGAGAATCCCCGATAGACCAAAAGATCGTGCCAAGTGGGATGGAATCGCGGATGTGGTGTCTGCGCTGTCAATTCCTGTCATAGCTAATGGGGATGTTTTC
     | |||  |           | ||| ||   | |   | |||||  || |||  || | | ||| ||||    |      |||  |||     | ||| |   ||   || ||||||| ||||| ||| ||||||||||  || || ||||| |||||||| ||||||||||| || ||||||||||| ||||| || 
cagaataatgtcatatatcaactctccattttcaatct--tccctaatatgtctttttttgttaattgatttccctgatgttggattcctttacacatgcagAAAGGTCAAAGACAGACCAAGAGATCCTGCTAAGTGGGATGAGATTGCAGATGTTGTGTCTGCACTGTCAATTCCAGTTATAGCTAATGGAGATGTATTT

upper sequence: EFJ24692 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: GRMZM2G468693_T03 (Zea mays), 3'ss of exon 2
---------------------------------------------------------------------------------------------------gtgatgctacgggattgagatgcatgtttcttttaaccgctaattcgtttttccttctcacttgttt-tcttacaaattttttt--ttccagGAGAATCCCCGATAGACCAAAAGATCGTGCCAAGTGGGATGGAATCGCGGATGTGGTGTCTGCGCTGTCAATTCCTGTCATAGCTAATGGGGATGTTTTC
                                                                                                    |  | | |     |  | ||     |   ||||      ||   | ||||    |     ||| || | || |   | |||    |  ||| |  ||    |||||||| | ||||| ||||||||||||||  || || ||||| ||||| |||||||||||||| || ||||||||||| ||||| || 
gtaatgacacatagaattgtatttttgagttgtgatagtctggtagataattgaaaccattcttactctagctttagaagcatgcaattagctatctgcatttttcaattatgtcaatatctccctcattttttttgagtacgcccttttataattagttttgcttatgttgctcctctttgaaatcgcagAAAGATTAAAGATAGACCGAGAGATCTTGCCAAGTGGGATGAGATAGCTGATGTTGTGTCAGCGCTGTCAATTCCAGTTATAGCTAATGGAGATGTCTTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaccgctaattcgtttttccttctcacttgttttcttacaaatttttttttccagGAGAATCCCCGATAGACCAAAAGATCGTGCCAAGTGGGATGGAATCGCGGATGTGGTGTCTGCGCTGTCAATTCCTGTCATAGCTAATGGGGATGTTTTC
                                ttcttac  putative branch site (score: 2)
                                          tttttttttcc  putative PPT
                           ttgttttcttacaaat  TA-rich tract