1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gcaagctatcaagctcttcgcgagtagattctggctaatggttttttctatgttgcttatagCTTACTGTGGCTTGCATCAAGATGGGGCGCCCGGAGATGGCTGAGCGTGCCATTGAAGTTGCGGAGAAACGGATCTCCAGAGACAGATGGCCAGAGTATT
species | Selaginella moellendorffii |
transcript | EFJ23966 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACCATGGTCGTATCACAACGGAGGTTCCTGGCCGACTCTCTTGTGGCAG CTTACTGTGGCTTGCATCAAGATGGGGCGCCCGGAGATGGCTGAGCGTGCCEST: gi|169021382|gb|FE431173.1|FE431173
genomic: ACCATGGTCGTATCACAACGGAGGTTCCTGGCCGACTCTCTTGTGGCAGgcaagctatc ... ttgcttatagCTTACTGTGGCTTGCATCAAGATGGGGCGCCCGGAGATGGCTGAGCGTGCC
EST: ACCGTGGTCGTATCACAACGGAGGTTCCTGGCCGACTCTCTTGTGGCAG CTTACTGTGGCTTGCATCAAGATGGGGCGCCCGGAGATGGCTGAGCGTGCCEST: gi|169080275|gb|FE488915.1|FE488915
genomic: ACCATGGTCGTATCACAACGGAGGTTCCTGGCCGACTCTCTTGTGGCAGgcaagctatc ... ttgcttatagCTTACTGTGGCTTGCATCAAGATGGGGCGCCCGGAGATGGCTGAGCGTGCC
EST: ACCGTGGTCGTATCACAACGGAGGTTCCTGGCCGACTCTCTTGTGGCAG CTTACTGTGGCTTGCATCAAGATGGGGCGCCCGGAGATGGCTGAGCGTGCCEST: gi|169030649|gb|FE438749.1|FE438749
genomic: ACCATGGTCGTATCACAACGGAGGTTCCTGGCCGACTCTCTTGTGGCAGgcaagctatc ... ttgcttatagCTTACTGTGGCTTGCATCAAGATGGGGCGCCCGGAGATGGCTGAGCGTGCC
EST: ACCGTGGTCGTATCACAACGGAGGTTCCTGGCCGACTCTCTTGTGGCAG CTTACTGTGGCTTGCATCAAGATGGGGCGCCCGGAGATGGCTGAGCGTGCCEST: gi|169055950|gb|FE466152.1|FE466152
genomic: ACCATGGTCGTATCACAACGGAGGTTCCTGGCCGACTCTCTTGTGGCAGgcaagctatc ... ttgcttatagCTTACTGTGGCTTGCATCAAGATGGGGCGCCCGGAGATGGCTGAGCGTGCC
EST: ACCATGGTCGTATCACAACGGAGGTTCCTGGCCGACTCTCTTGTGGCAG CTTACTGTGGCTTGCATCAAGATGGGGCGCCCGGAGATGGCTGAGCGTGCCEST: gi|169066556|gb|FE476287.1|FE476287
genomic: ACCATGGTCGTATCACAACGGAGGTTCCTGGCCGACTCTCTTGTGGCAGgcaagctatc ... ttgcttatagCTTACTGTGGCTTGCATCAAGATGGGGCGCCCGGAGATGGCTGAGCGTGCC
EST: ACCGTGGTCGTATCACAACGGAGGTTCCTGGCCGACTCTCTTGTGGCAG CTTACTGTGGCTTGCATCAAGATGGGGCGCCCGGAGATGGCTGAGCGTGCC
genomic: ACCATGGTCGTATCACAACGGAGGTTCCTGGCCGACTCTCTTGTGGCAGgcaagctatc ... ttgcttatagCTTACTGTGGCTTGCATCAAGATGGGGCGCCCGGAGATGGCTGAGCGTGCC
atcaagctcttcgcgagtagattctggctaatggttttttctatgttgcttatagCTTACTGTGGCTTGCATCAAGATGGGGCGCCCGGAGATGGCTGAGCGTGCCATTGAAGTTGCGGAGAAACGGATCTCCAGAGACAGATGGCCAGAGTATT
ggctaat putative branch site (score: 2)
ttttttctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagctatcaagctcttcgcgagtagattctggctaatggttttttctatgttgcttatagCTTACTGTGGCTTGCATCAAGATGGGGCGCCCGGAGATGGCTGAGCGTGCCATTGAAGTTGCGGAGAAACGGATCTCCAGAGACAGATGGCCAGAGTATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG