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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtacctttgtgttctttcttgttggcattctgtgtctctttctcgttatggctagtgggcgtgccatggctttgttccttctttgtgtccttttcatcgcttttttctttgacatttgcttcgttgtgctggacagGAGAACCAAAAGTCGAATCTCGCGCAATCCACCGGGCTGGACCCAAAGCAGATCAACAACTGGTTTATAAACCAGCGAAAGCGGCACTGGAATCCGCAGG

Basic information

species Selaginella moellendorffii
transcript EFJ23802
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ23803 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: LOC_Os03g47016.1 (Oryza sativa), 3'ss of exon 1
gtgagtacctttgtgttctttcttgttggcattctgtgtctctttctcgttatggctagtgggcgtgccatggctttgttccttctttgtgtccttttcatcgcttttttctttga-catttgct-tcgttgtgctgg-acagGAGAACCAAAAGTCGAATCTCGCGCAATCCACCGGGCTGGACCCAAAGCAGATCAACAACTGGTTTATAAACCAGCGAAAGCGGCACTGGAATCCGCAGG
                                                                || | | |   ||| |   | ||  | |   |   |         |   ||| |  ||||  | | ||||  ||  ||||||    | ||| ||   || ||| | || || ||||||||| | |||||||||||||||||||| || |||||||| ||||| |||||||| |||  | 
----------------------------------------------------------------gtacgacgatcttgcttaattttgatctgtgtaagaagaagaagatggctgatcgattgcagttgctgtggcggtgcagGAGCTGGAGAAGGCGGCGCTGGCGGAGTCGACGGGGCTGGACGCGAAGCAGATCAACAACTGGTTCATCAACCAGCGGAAGCGCCACTGGAAGCCGACGC

upper sequence: EFJ23803 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: LOC_Os03g51690.3 (Oryza sativa), 3'ss of exon 3
gtgagtacctttgtgttctttcttgttggcattctgtgtctctttctcgttatggctagtgg-gcgtgccatggctttgttccttctttgtgtccttttcatcgcttttttctttgacatttgcttcgttgtgctggacagGAGAACCAAAAGTCGAATCTCGCGCAATCCACCGGGCTGGACCCAAAGCAGATCAACAACTGGTTTATAAACCAGCGAAAGCGGCACTGGAATCCGCAGG
                         | |  ||    |  |  ||    | |||      |   ||  || || ||  ||    ||       ||||  |||| | | | |        || |  ||     ||  |  |||||||  || |||  |   || ||| | || || ||||||||||  |||||||||||||||||||| || |||||| | |||||||||||||| ||    |
-------------------------tagttatctactaccatttctgtgctataaaatataatgcaagctatcgccatgcagatt-------tcctgatcatggttatgt--------atctattttac-atgtggagcagGAGAGTCAGAAGGTGGCACTGGCGGAGTCGACGGGGCTGGACCTGAAGCAGATCAACAACTGGTTCATCAACCAGAGGAAGCGGCACTGGAAGCCCTCCG

upper sequence: EFJ23803 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: LOC_Os03g56110.2 (Oryza sativa), 3'ss of exon 4
gtgagtacctttgtgttctttcttgttggcattctgtgtctctttctcgttatggctagtgggcgtgccatggctttgttccttctttgtgtccttttcatcgcttttttctttgacatttgcttcgttgtgc-tggacagGAGAACCAAAAGTCGAATCTCGCGCAATCCACCGGGCTGGACCCAAAGCAGATCAACAACTGGTTTATAAACCAGCGAAAGCGGCACTGGAATCCGCAGG
                                  |  |      || | |   |  |  |        |     ||| | |      |     | ||| |         |   ||| |||| |   ||||||  ||  |||||||   | |||  ||  || |||||  | || ||||||||||  |||||||||||||||||||| || |||||| | |||||||||||||| |||  | 
---------------------------------gtacgcacgcatcacatcccgtttgatcaattcaaccacattttctgcaccaaattaactcgtttgaaaa------tgcgtgaaatttacggggttgtgtatgagcagGAGATGGAGAAGATGACGCTGGCGCAGACGACGGGGCTGGACCAGAAGCAGATCAACAACTGGTTCATCAACCAGAGGAAGCGGCACTGGAAGCCGACGC

upper sequence: EFJ23803 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: LOC_Os03g56140.2 (Oryza sativa), 3'ss of exon 4
gtgagtacctttgtgttctttcttgttggcattc-tgtgtctctttctcgttatggctagtgggcgtgccatggctttgttccttctttgtgtccttttcatcgcttttttctttgacatttgcttcgttgtgctggacagGAGAACCAAAAGTCGAATCTCGCGCAATCCACCGGGCTGGACCCAAAGCAGATCAACAACTGGTTTATAAACCAGCGAAAGCGGCACTGGAATCCGCAGG
                        ||  |||  | | | | |  ||| | || ||   | |       | ||   | ||  ||    | |      |   |  || |     | |    | | | |   |||  ||  ||||||    | |||  ||  || |||||  | || ||||||||||  |||||||||| ||||||||| || |||||| | |||||||||||||| |||  | 
------------------------gtacgcacgcatatatatgcttcccatt-tgatcaattcaaccac-atttttctgcaccaaactcgatcttatgaaaatgcgtgaacttctcgggtgtacatgtgtgta-tgagcagGAGGTGGAGAAGATGACGCTGGCGCAGACGACGGGGCTGGACCAGAAGCAGATCAGCAACTGGTTCATCAACCAGAGGAAGCGGCACTGGAAGCCGACGC

upper sequence: EFJ23803 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: LOC_Os05g03884.1 (Oryza sativa), 3'ss of exon 4
gtgagtacctttgtgttctttcttgttggcattctgtgtctctttctcgttatggctagtgggcgtgccatggctttgttccttctttgtgtccttttcatcgcttttttctttgacatttgcttc--gttg-tgctggacagGAGAACCAAAAGTCGAATCTCGCGCAATCCACCGGGCTGGACCCAAAGCAGATCAACAACTGGTTTATAAACCAGCGAAAGCGGCACTGGAATCCGCAGG
                                                        || ||  || |  |  || || |     |       ||| |    | |  |   ||  |||  |  ||||   ||| |  |  ||||||  |  | |||  ||  || ||       || || || ||||| |||||||||||||||||||| || |||||| | ||| |||||||||| ||   ||
-------------------------------------------------------gtaatgt-cgcgaaaacgccttttcgacacacaaaagcctctaacccacactgacctgggactctgtcttccaattgatctttcacagGAAGAGGATAAGGTGAGGCTGGCCGCGATGACTGGCCTCGACCCGAAGCAGATCAACAACTGGTTCATCAACCAGAGGAAGAGGCACTGGAAGCCATCGG

upper sequence: EFJ23803 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: LOC_Os01g19694.1 (Oryza sativa), 3'ss of exon 4
gtgagtacctttgtgttctttcttgttggcattctgtgtctctttctcgttatggctagtgggcgtgccatggctttgttccttctttgtgtccttttcatcgcttttttctttgacatttgcttcgttgtgctggacagGAGAACCAAAAGTCGAATCTCGCGCAATCCACCGGGCTGGACCCAAAGCAGATCAACAACTGGTTTATAAACCAGCGAAAGCGGCACTGGAATCCGCAGG
                                   |  | |||  | |  | ||  |        | |  |  ||    |  |    |   |  | ||  |   | | || | |||| ||    | ||  || | |||||||  |  | |||  ||  || ||       || || || |||||||||||||||||||| ||||| || |||||| | ||| |||||||||| ||   ||
----------------------------------cgcttgtctgccccact-tgcatcccttcttttctgtaactgaaattttgtggtacattatgttagta--tatattgtctgacgttg---tggtgctgattgacagGAAGAAGATAAGCTGAGGCTTGCAGCGAGGACAGGTCTTGACCCAAAGCAGATCAACAATTGGTTCATCAACCAGAGGAAGAGGCACTGGAAGCCATCGG

upper sequence: EFJ23803 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: LOC_Os07g03770.1 (Oryza sativa), 3'ss of exon 4
--gtgagtacctttgtgttctttcttgttggcattctgtgtctctttctcgttatggctagtgggcgtgccatggctttgttccttctttgtgtccttttcatcgcttttttctt-tgacatttgcttcgttgtgctggacagGAGAACCAAAAGTCGAATCTCGCGCAATCCACCGGGCTGGACCCAAAGCAGATCAACAACTGGTTTATAAACCAGCGAAAGCGGCACTGGAATCCGCAGG
    || |||   |      || | || |   ||   ||   |    |   |||      |    | |       |     || |  ||    ||   | ||||      || ||   |  |||||  |  || | ||   ||||||   | |||      || ||| |||| || || || || |  |||||||||||||||||||| || |||||| | || ||||||||||| ||   ||
gtaagattacacatacaaaattacctgataatatatagtaattgccaca-attacctaatgcatacatagttctacaaacatcttagttcagatcagatgcatcatcacattgttactaactttgcaccaatgggatgagtagGAGACGGAGAAGATTGCGCTTGCGGAATCGACAGGACTAGATCAGAAGCAGATCAACAACTGGTTCATCAACCAGAGGAAACGGCACTGGAAGCCATCGG

upper sequence: EFJ23803 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: GRMZM2G135447_T01 (Zea mays), 3'ss of exon 4
gtgagtacctttgtgttctttcttgttggcattctgtgtctctttctcgttatggctagtgggcgtgccatggctttgttccttctttgtgtccttttcatcgcttttttctttgacatttgcttcgttgtgctggacagGAGAACCAAAAGTCGAATCTCGCGCAATCCACCGGGCTGGACCCAAAGCAGATCAACAACTGGTTTATAAACCAGCGAAAGCGGCACTGGAATCCGCAGG
|| ||  |||   | |  || |||     |  ||  ||  |   |      | ||| | |       |  || || ||||        |        | |    |||  |   ||||   || ||||  || ||   |||||||   | |||  |   |||||  |  | |||||||||||||| |||||||||||||||||||| || |||||||| |||||||||||||| |||  | 
gtaagaccctacctatgtttcctt-----ccatccatgcattgctaatacaacggcaacta------ctgtgtctatgtttggaagaagaaaaaaaatgaagcttttgatgcatgactactgtttcga-gtactcaccagGAGACGGAGAAGATGGCGCTCGCAGAGACGACCGGGCTGGACCCGAAGCAGATCAACAACTGGTTCATCAACCAGCGGAAGCGGCACTGGAAGCCGGCGT

upper sequence: EFJ23803 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: GRMZM2G094241_T01 (Zea mays), 3'ss of exon 4
gtgagtacctttgtgttctttcttgttggcattctgtgtctctttctcgttatggctagtgggcgtgccatggctt-tgttccttctttgtgtccttttcatcgcttttttctttgacatttgcttcgttgtgctggacagGAGAACCAAAAGTCGAATCTCGCGCAATCCACCGGGCTGGACCCAAAGCAGATCAACAACTGGTTTATAAACCAGCGAAAGCGGCACTGGAATCCGCAGG
                                                    |  | | ||   |   | ||||       |       |  ||  |  |     |      | ||  |   || |      || |  |||||| |  | |||  ||  || |||    | || ||||||||||| |||||||||||||||||||| || |||||||| |||||||||||||| |||   |
---------------------------------------------------gtaacca-tgcatgcatcctggcaaacacgcagcagcagcatcgctcgctggaatggcagatctgtgaccagcattagccggcggtgcagGAGGAGGACAAGGTGAGGCTGGCGGCGGCGACTGGGCTGGACCCGAAGCAGATCAACAACTGGTTCATCAACCAGCGGAAGCGGCACTGGAAGCCGTCCG

upper sequence: EFJ23803 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: GRMZM5G832409_T01 (Zea mays), 3'ss of exon 4
gtgagtacctttgtgttctttcttgttggcattct-gtgtctctttctcgttatggctagtgggcgtgccatggctttgttccttctttgtgtccttttcatcgcttttttctttgacatttgcttcgttgtgctggacagGAGAACCAAAAGTCGAATCTCGCGCAATCCACCGGGCTGGACCCAAAGCAGATCAACAACTGGTTTATAAACCAGCGAAAGCGGCACTGGAATCCGCAGG
                          |  ||| ||     | |   |  ||  ||  |    |   |  | | ||||||  |   |  |     || |     || |||| ||  |||  |   |   |||| |  | |||||| |  | |||  ||  || |||      || ||||||||||| |||||||||||||||||||| || |||||||| |||||||| ||||| |||  ||
-------------------------gtaacatgctcacagcacacacctgtgctg--tgactgatctttcctcgctttgaacgaacaatcgaatctgtgatcggcattttgctcagac--taagtatcttgttc--ggcagGAGGAGGATAAGGTGAGGCTGGCGGCCATGACTGGGCTGGACCCGAAGCAGATCAACAACTGGTTCATCAACCAGCGGAAGCGGCATTGGAAGCCGTCGG

upper sequence: EFJ23803 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: GRMZM2G017087_T03 (Zea mays), 3'ss of exon 3
gtgagtacctttgtgttctttcttgttggcattctgtgtctctttctcgttatggctagtgggcgtgccatggctttgttccttctttgtgtccttttcatcgcttttttctttgacatttgcttcgttgtgctggacagGAGAACCAAAAGTCGAATCTCGCGCAATCCACCGGGCTGGACCCAAAGCAGATCAACAACTGGTTTATAAACCAGCGAAAGCGGCACTGGAATCCGCAGG
                                  | | ||   |  || || ||     |||  ||    |      |    |    |||| | |    |  |  | |   ||   ||  | ||||     | ||  |||||||  || |||  |   || ||  | || |||||||| ||||  |||||||||||||||||||| || |||||||| |||||||||||||| ||    |
---------------------------------ttttatcatatcttcattttgt----tggatgttttgta-tacggcatatagcctgtg-cttccctactggatatgaattaaccaact-cttcccatcggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAGATCAACAACTGGTTCATCAACCAGCGGAAGCGGCACTGGAAGCCATCCG

upper sequence: EFJ23803 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: GRMZM2G452178_T01 (Zea mays), 3'ss of exon 4
gtgagtacctttgtgttctttcttgttggcattctgtgtctctttctcgttatggctagtgggcgtgc-catg-gctttgttccttctttgtgtccttttcatcgcttttttctttgacatttgcttcgttgtgctggacagGAGAACCAAAAGTCGAATCTCGCGCAATCCACCGGGCTGGACCCAAAGCAGATCAACAACTGGTTTATAAACCAGCGAAAGCGGCACTGGAATCCGCAGG
|||||   ||      |||  | ||  | | | |  |  | |  |   |  | |     |   ||| | |||       |  | | | ||||| ||||  | ||||| |  |  |     ||||  |     |||     ||||||   | |||      || ||  |  | || || |||||||  |||||||||||||||||||| || |||||||| |||||||||||||| |||  ||
gtgagagact----aatctcccgtgcggccgtgccttaacacaatgctgaca-gatcgattaccgtactcatacagcacgcgcgtgccttgtgcccttggc-tcgctgtgcttgt----gtttgtctgaacatgc-----agGAGACGGAGAAGATCGCGCTGGCAGAGGCGACTGGCCTGGACCAGAAGCAGATCAACAACTGGTTCATCAACCAGCGGAAGCGGCACTGGAAGCCGTCGG

upper sequence: EFJ23803 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: GRMZM2G061101_T02 (Zea mays), 3'ss of exon 3
gtgagtacctttgtgttctttcttgttggcattctgtgtctctttctcgttatggctagtgggcgtgc-catggctttgttccttctttgtgtc-cttttcatcgcttttttctttgacatttgcttcgttgtgctggacagGAGAACCAAAAGTCGAATCTCGCGCAATCCACCGGGCTGGACCCAAAGCAGATCAACAACTGGTTTATAAACCAGCGAAAGCGGCACTGGAATCCGCAGG
                                   ||   |  | | | | |   |   ||    |||       |  | || | |  || | | |||  |  |||      |          ||   |   |||  | ||||||    | ||| ||   || ||| | || || ||||| ||| | |||||||||||||||||||| || |||||||| ||||| |||||||| |||  | 
-----------------------------------gtacgtagtac-catgacaacacatgcatatgcgtgcatgtaagatcatgcaatgcgacacttgacgacgcacgccgc----------gcgcggccatgcatg-cagGAGCTGGAGAAGGCGGCGCTGGCGGAGTCGACGGGGCTCGACGCGAAGCAGATCAACAACTGGTTCATCAACCAGCGGAAGCGCCACTGGAAGCCGGCGC

upper sequence: EFJ23803 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: GRMZM2G002225_T01 (Zea mays), 3'ss of exon 4
gtgagtacctttgtgttctttcttgttggcattctgtgtctctttctcgttatggctagtgggcgtgc-catggctttgttccttctttgtgtccttttcatcgctt--ttttctttgacatttgcttcgttgtgctggacagGAGAACCAAAAGTCGAATCTCGCGCAATCCACCGGGCTGGACCCAAAGCAGATCAACAACTGGTTTATAAACCAGCGAAAGCGGCACTGGAATCCGCAGG
                                |  | |    ||||     | | | |    || ||  | |    | |||   |       | |  | || | |||  |       |||    ||  | | | | |   ||||||    | ||| ||   || ||| | || || ||||| ||  | |||||||||||||| ||||| || |||||||| ||||| |||||||| | |    
-------------------------------gtacgcgagagtttccacgcacgtccatcatgcatgttcgtattgtagttttgtaagatcatgcaatgcaccacttggtgacgcacgacgccggccgcat-gcg-tatgcagGAGCTGGAGAAGGCGGCGCTGGCGGAGTCGACGGGGCTCGAAGCGAAGCAGATCAACAATTGGTTCATCAACCAGCGGAAGCGCCACTGGAAGCAGGCAC

upper sequence: EFJ23803 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: GRMZM2G028041_T01 (Zea mays), 3'ss of exon 4
gtgagtacctttgtgttctttcttgttggcattctgtgtctctttctcgttatggctagtgggcgtgccatggctttgttccttctttgtgtccttttcatcgcttttttctttgacatttgcttcgttgtgctggacagGAGAACCAAAAGTCGAATCTCGCGCAATCCACCGGGCTGGACCCAAAGCAGATCAACAACTGGTTTATAAACCAGCGAAAGCGGCACTGGAATCCGCAGG
                               ||| ||| |  || | || | |    | ||       ||   |  ||  |       |  |   ||  ||  | || ||  | ||  |    || |||     |  |||||||   | |||      |||||  |||| || || || ||||  |||||||||||||||||||| || |||||| | || ||||||||||| ||   ||
-------------------------------ttccgtgacctttacgcgatgttaacactg----cttcagaaccatgaactgaagcagaatgtattgtataacattgttact-gatttaatgtttgtt----cgagcagGAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAGATCAACAACTGGTTCATCAACCAGAGGAAACGGCACTGGAAGCCATCGG

upper sequence: EFJ23803 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: GRMZM2G087741_T01 (Zea mays), 3'ss of exon 4
gtgagtacctttgtgttctttcttgttggcattctgtgtctctttctcgttatggctagtgggcgtgccatggctttgttccttctttgtgtccttttcatcgcttttttctttgacatttgcttcgttgtgctggacagGAGAACCAAAAGTCGAATCTCGCGCAATCCACCGGGCTGGACCCAAAGCAGATCAACAACTGGTTTATAAACCAGCGAAAGCGGCACTGGAATCCGCAGG
                        ||  | |  |  || |  ||| |  | |   | |     |      ||    ||    | |  |||| ||     |  |  |  |  | |||    ||||  | ||     |||||||| |  | |||  ||  |||||   |   ||||| || ||||| |||||||||||||||||||| || |||||| | ||| |||| ||||| ||    |
------------------------gtatgtaggcgctggccattttttttcac--caaacaatc------tgaacctgcaggtgcactgtgacc-----agtgactgataatctga----tgctgtgctgct---gacagGAGGAAGACAAGGTGAGGCTCGCAGCAATGACCGGTCTCGACCCGAAGCAGATCAACAACTGGTTCATCAACCAGAGGAAGAGGCATTGGAAGCCATCTG

upper sequence: EFJ23803 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: Vv17s0000g08710.t01 (Vitis vinifera), 3'ss of exon 4
gtgagtacctttgtgttctttcttgttggcattctgtgtctctttctcgttatggctagtgggcgtgccatggctttgttccttctttgtgtccttttcatcgcttttttctttgacatttgcttcgttgtgctggacagGAGAACCAAAAGTCGAATCTCGCGCAATCCACCGGGCTGGACCCAAAGCAGATCAACAACTGGTTTATAAACCAGCGAAAGCGGCACTGGAATCCGCAGG
                        ||    |    || ||  |||   |||  || |  |  || |   ||  ||  |  ||||| |  |||  ||   |||    || ||||||       |||   ||| | |||  |||  ||  ||  ||| | || ||  |||| || || |||||||  |||||||| ||||||||||| |||||||| || || ||||||||||| ||   ||
------------------------gtaaaaaagtagt-tcaatttaaagtttagggt--ttagcatatgata-ctccgacccttcataatgttattaatatcttacttctctttg-------cttaaatgtacagGA--GGAAGAC--AAGATCGCA-CTGGCTGAATCAACAGGCCTGGACCAGAAGCAGATAAACAACTGGTTCATAAACCAACGTAAACGGCACTGGAAGCCATCGG

upper sequence: EFJ23803 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: Vv01s0127g00210.t01 (Vitis vinifera), 3'ss of exon 4
gtgagtacctttgtgttctttcttgttggcattctgtgtctct-ttctcgttatggctagtgggcgtgccatggctttgttccttctttgtgtccttttcatcgcttttttctttgacatttgcttcgttgtgctggacagGAGAACCAAAAGTCGAATCTCGCGCAATCCACCGGGCTGGACCCAAAGCAGATCAACAACTGGTTTATAAACCAGCGAAAGCGGCACTGGAATCCGCAGG
                        ||  ||| | ||||| |   ||  | |||| |   |||||  ||| ||  || | |||    | | || || |   | ||||||||  | |   ||    | |     ||||             ||| | | | || ||  || | || || |||||||  ||||| || ||||| ||||||||||| || ||||||||||||||||| ||    |
--------------------gtaagtctgcactttgtgttttcatttcctttatag--ggtgggaatgc-ata-ctattttctgagtctttgaccat---accgctttttcttatataat--aatccagGAAGCTGAT-----------AAAATTGCA-CTTGCTGAAACAACGGGTCTGGACCAGAAGCAAATTAACAATTGGTTTATAAATCAACGAAAGCGGCACTGGAAACCATCAG

upper sequence: EFJ23803 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: Vv14s0060g01180.t01 (Vitis vinifera), 3'ss of exon 4
gtgagtacctttgtgttctttcttgttggcattctgtgtctctttctcgttatggctagtgggcgtgccatggctttgttccttctttgtgtccttttcatcgcttttttctttgacatttgcttcgttgtgctggacagGAGAACCAAAAGTCGAATCTCGCGCAATCCACCGGGCTGGACCCAAAGCAGATCAACAACTGGTTTATAAACCAGCGAAAGCGGCACTGGAATCCGCAGG
                                        |   | | |   | |    | |   ||| || |||  |   ||| |||   | | ||||    |   | |||   |     | ||  |  || |  ||||||  |  | || | ||| ||  |  |    || || || ||||  |||||||| ||||||||||| ||||||||| | |||||||| ||||| ||    |
-----------------------------------aaaagttcatattggagttgtatttagaactgctatcgctgggacacttgtttactttcatttctggacacgtatctgaaaag---gattgatgatgat--acagGAAGATGAGAAATTGAAGCTATCAGAGGTTACTGGACTAGACCAGAAGCAGATTAACAACTGGTTCATAAACCAGAGGAAGCGGCATTGGAAACCATCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtgtccttttcatcgcttttttctttgacatttgcttcgttgtgctggacagGAGAACCAAAAGTCGAATCTCGCGCAATCCACCGGGCTGGACCCAAAGCAGATCAACAACTGGTTTATAAACCAGCGAAAGCGGCACTGGAATCCGCAGG
                         ctttgac  putative branch site (score: 4)
                   ttttttcttt  TA-rich tract