1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgtattcaactccgtctagtagttcgtctctctaacacgatcgacgcagGGCCTATTATTGAGGAGATCACTGAAGAGGAGGCTGAGAGACTGACGTCTACAGTATCAACGCGCAGGGAAGGAGTTGCTAACCGTGCAACAGAGGGTGA
species | Selaginella moellendorffii |
transcript | EFJ23762 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGTGGAAAAGGTACAAAAAGAGGATGACTACGTACAACATAATAGTGATG GGCCTATTATTGAGGAGATCACTGAAGEST: gi|169093336|gb|FE491860.1|FE491860
genomic: TGTGGAAAAGGTAGAAAAAGAGGATGACTATGTACAACATAATAGCGATGgtatgtattc ... atcgacgcagGGCCTATTATTGAGGAGATCACTGAAG
EST: TGTGGAAAAGGTACAAAAAGAGGATGACTACGTACAACATAATAGTGATG GGCCTATTATTGAGGAGATCACTGAAGAGGAGGCTGAGAGACTGACGTCTAEST: gi|169116298|gb|FE517245.1|FE517245
genomic: TGTGGAAAAGGTAGAAAAAGAGGATGACTATGTACAACATAATAGCGATGgtatgtattc ... atcgacgcagGGCCTATTATTGAGGAGATCACTGAAGAGGAGGCTGAGAGACTGACGTCTA
EST: TGTGGAAAAGGTACAAAAAGAGGATGACTACGTACAACATAATAGTGATG GGCCTATTATTGAGGAGATCACTGAAGAGGAGGCTGAGAGACTGACGTCTA
genomic: TGTGGAAAAGGTAGAAAAAGAGGATGACTATGTACAACATAATAGCGATGgtatgtattc ... atcgacgcagGGCCTATTATTGAGGAGATCACTGAAGAGGAGGCTGAGAGACTGACGTCTA
gtatgtattcaactccgtctagtagttcgtctctctaacacgatcgacgcagGGCCTATTATTGAGGAGATCACTGAAGAGGAGGCTGAGAGACTGACGTCTACAGTATCAACGCGCAGGGAAGGAGTTGCTAACCGTGCAACAGAGGGTGA
ctctaac putative branch site (score: 30)
atgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtattcaactccgtctagtagttcgtctctctaacacgatcgacgcagGGCCTATTATTGAGGAGATCACTGAAGAGGAGGCTGAGAGACTGACGTCTACAGTATCAACGCGCAGGGAAGGAGTTGCTAACCGTGCAACAGAGGGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG