Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacgtaacctcagctttcctggctttcaaagctggagaacaaattcctttttctaacacgctctcccgacttgacagGTATATGCTCAACCAGTGTTCGCGCTGGGGGAATGGTACGCCTCCCAGAAGTGGCCAAAGTCGAACCTCGTAAACAGGGAATACTCCGTAACGGTGCTCA

Basic information

species Selaginella moellendorffii
transcript EFJ23727
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169056150|gb|FE464038.1|FE464038
EST:     TCGACTTTGCGAACATCTGCATCATCATCCATCTCGTCGGCGGCTATCAG                         GTATATGCTCAACCAGTGTTCGCGCTGGGGGAATGGTACGCCTCCCAGAAG
genomic: TCGACTTTGCGAACATCTGCATCATCATCCATCTCGTCGGCGGCTATCAGgtaacgtaac ... gacttgacagGTATATGCTCAACCAGTGTTCGCGCTGGGGGAATGGTACGCCTCCCAGAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttcaaagctggagaacaaattcctttttctaacacgctctcccgacttgacagGTATATGCTCAACCAGTGTTCGCGCTGGGGGAATGGTACGCCTCCCAGAAGTGGCCAAAGTCGAACCTCGTAAACAGGGAATACTCCGTAACGGTGCTCA
                            ttctaac  putative branch site (score: 1)
                                      ctctcccg  putative PPT
                         tttttctaa  TA-rich tract