1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagtgatcgctgtttattcggttacgtcgtctgttgtttgtttttttttttttttttcctttcctcgtttgctttctcgttgttttcgttgtctttgctttcataacactgtttgtggtgctaaaaacgtttgctttgttttttttgccagGCCCAAAGACGATTCTCCGCGTGTGAAATCGTGGAAGATTTCAACCAGGCGGCTGCAGGATTTGGGGCTCAAGTTTAGGCCCTTTGAGGAGTACATTGCA
species | Selaginella moellendorffii |
transcript | EFJ23694 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTTGTGGAGGCCATGGCAAAACTTTTTCCGGACTATCCAATCCCGCGAAA GCCCAAAGACGATTCTCCGCGTGTGAAATCGTGGAAGATTTCAACCAGGCGEST: gi|169074669|gb|FE480899.1|FE480899
genomic: GTTGTGGAGGCCATGGCAAAACTTTTTCCGGACTATCCAATCCCGCGAAAgtgagtgatc ... tttttgccagGCCCAAAGACGATTCTCCGCGTGTGAAATCGTGGAAGATTTCAACCAGGCG
EST: GTTGTGGAGGCCATGGCAAAACTTTTTCCGGACTATCCAATCCCGCGAAA GCCCAAAGACGATTCTCCGCGTGTGAAATCGTGGAAGATTTCAACCAGGCGEST: gi|169049322|gb|FE458233.1|FE458233
genomic: GTTGTGGAGGCCATGGCAAAACTTTTTCCGGACTATCCAATCCCGCGAAAgtgagtgatc ... tttttgccagGCCCAAAGACGATTCTCCGCGTGTGAAATCGTGGAAGATTTCAACCAGGCG
EST: GTTGTGGAGGCCATGGCAAAACTTTTTCCGGACTATCCAATCCCGCGAAA GCCCAAAGACGATTCTCCGCGTGTGAAATCGTGGAAGATTTCAACCAGGCG
genomic: GTTGTGGAGGCCATGGCAAAACTTTTTCCGGACTATCCAATCCCGCGAAAgtgagtgatc ... tttttgccagGCCCAAAGACGATTCTCCGCGTGTGAAATCGTGGAAGATTTCAACCAGGCG
gctttcataacactgtttgtggtgctaaaaacgtttgctttgttttttttgccagGCCCAAAGACGATTCTCCGCGTGTGAAATCGTGGAAGATTTCAACCAGGCGGCTGCAGGATTTGGGGCTCAAGTTTAGGCCCTTTGAGGAGTACATTGCA
tgctaaa putative branch site (score: 53)
tttgctttgttttttt putative PPT
tttgtttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgatcgctgtttattcggttacgtcgtctgttgtttgtttttttttttttttttcctttcctcgtttgctttctcgttgttttcgttgtctttgctttcataacactgtttgtggtgctaaaaacgtttgctttgttttttttgccagGCCCAAAGACGATTCTCCGCGTGTGAAATCGTGGAAGATTTCAACCAGGCGGCTGCAGGATTTGGGGCTCAAGTTTAGGCCCTTTGAGGAGTACATTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG