1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatagtttttaaagtttctttcctgtcctcttacttgagagaatctttcgagcagGCTCTCTTCAGGAAAATCGCTGCGGCGTTACCGGGAATGGAAGCGCTCTCGTCCGCTAAGCAAGAAGATCTAGTGGACGTCAGCTTGAAGACAAATCCCC
species | Selaginella moellendorffii |
transcript | EFJ22994 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCGGAGTCATGTACATTGAAACCAGTGCCAAGGCCGGATTCAACATCAAG GCTCTCTTCAGGAAAATCGCTGCGGCGTTACCGGGAATGGAAGCGCTCTCGEST: gi|169042135|gb|FE454178.1|FE454178
genomic: TCGGAGTCATGTACATTGAAACCAGTGCCAAGGCCGGATTCAACATCAAGgtatagtttt ... tttcgagcagGCTCTCTTCAGGAAAATCGCTGCGGCGTTACCGGGAATGGAAGCGCTCTCG
EST: TCGGAGTTATGTACATTGAAACCAGTGCCAAGGCCGGATTCAACATCAAG GCTCTCTTCAGGAAAATCGCTGCGGCGTTACCGGGAATGGAAGCGCTCTCGEST: gi|169033383|gb|FE441762.1|FE441762
genomic: TCGGAGTCATGTACATTGAAACCAGTGCCAAGGCCGGATTCAACATCAAGgtatagtttt ... tttcgagcagGCTCTCTTCAGGAAAATCGCTGCGGCGTTACCGGGAATGGAAGCGCTCTCG
EST: TCGGAGTCATGTACATTGAAACCAGTGCCAAGGCCGGATTCAACATCAAG GCTCTCTTCAGGAAAATCGCTGCGGCGTTACCGGGAATGGAAGCGCTCTCGEST: gi|169039199|gb|FE447795.1|FE447795
genomic: TCGGAGTCATGTACATTGAAACCAGTGCCAAGGCCGGATTCAACATCAAGgtatagtttt ... tttcgagcagGCTCTCTTCAGGAAAATCGCTGCGGCGTTACCGGGAATGGAAGCGCTCTCG
EST: TCGGAGTTATGTACATTGAAACCAGTGCCAAGGCCGGATTCAACATCAAG GCTCTCTTCAGGAAAATCGCTGCGGCGTTACCGGGAATGGAAGCGCTCTCGEST: gi|169047766|gb|FE454622.1|FE454622
genomic: TCGGAGTCATGTACATTGAAACCAGTGCCAAGGCCGGATTCAACATCAAGgtatagtttt ... tttcgagcagGCTCTCTTCAGGAAAATCGCTGCGGCGTTACCGGGAATGGAAGCGCTCTCG
EST: TCGGAGTTATGTACATTGAAACCAGTGCCAAGGCCGGATTCAACATCAAG GCTCTCTTCAGGAAAATCGCTGCGGCGTTACCGGGAATGGAAGCGCTCTCGEST: gi|169033384|gb|FE441763.1|FE441763
genomic: TCGGAGTCATGTACATTGAAACCAGTGCCAAGGCCGGATTCAACATCAAGgtatagtttt ... tttcgagcagGCTCTCTTCAGGAAAATCGCTGCGGCGTTACCGGGAATGGAAGCGCTCTCG
EST: TCGGAGTCATGTACATTGAAACCAGTGCCAAGGCCGGATTCAACATCAAG GCTCTCTTCAGGAAAATCGCTGCGGCGTTACCGGGAATGGAAGCGCTCTCGEST: gi|169101421|gb|FE502538.1|FE502538
genomic: TCGGAGTCATGTACATTGAAACCAGTGCCAAGGCCGGATTCAACATCAAGgtatagtttt ... tttcgagcagGCTCTCTTCAGGAAAATCGCTGCGGCGTTACCGGGAATGGAAGCGCTCTCG
EST: TCGGAGTCATGTACATTGAAACCAGTGCCAAGGCCGGATTCAACATCAAG GCTCTCTTCAGGAAAATCGCTGCGGCGTTACCGGGGAATGGAAGCGCTCTCEST: gi|169039198|gb|FE447794.1|FE447794
genomic: TCGGAGTCATGTACATTGAAACCAGTGCCAAGGCCGGATTCAACATCAAGgtatagtttt ... tttcgagcagGCTCTCTTCAGGAAAATCGCTGCGGCGTTACCGGG-AATGGAAGCGCTCTC
EST: TCGGAGTTATGTACATTGAAACCAGTGCCAAGGCCGGATTCAACATCAAG GCTCTCTTCAGGAAAATCGCTGCGGCGTTACCGGGAATGGAAGCGCTCTCGEST: gi|169101420|gb|FE502537.1|FE502537
genomic: TCGGAGTCATGTACATTGAAACCAGTGCCAAGGCCGGATTCAACATCAAGgtatagtttt ... tttcgagcagGCTCTCTTCAGGAAAATCGCTGCGGCGTTACCGGGAATGGAAGCGCTCTCG
EST: TCGGAGTCATGTACATTGAAACCAGTGCCAAGGCCGGATTCAACATCAAG GCTCTCTTCAGGAAAATCGCTGCGGCGTTACCGGGAATGGAAGCGCTCTCGEST: gi|169036631|gb|FE446555.1|FE446555
genomic: TCGGAGTCATGTACATTGAAACCAGTGCCAAGGCCGGATTCAACATCAAGgtatagtttt ... tttcgagcagGCTCTCTTCAGGAAAATCGCTGCGGCGTTACCGGGAATGGAAGCGCTCTCG
EST: TCGGAGTTATGTACATTGAAACCAGTGCCAAGGCCGGATTCAACATCAAG GCTCTCTTCAGGAAAATCGCTGCGGCGTTACCGGGAATGGAAGCGCTCTCGEST: gi|169104604|gb|FE508204.1|FE508204
genomic: TCGGAGTCATGTACATTGAAACCAGTGCCAAGGCCGGATTCAACATCAAGgtatagtttt ... tttcgagcagGCTCTCTTCAGGAAAATCGCTGCGGCGTTACCGGGAATGGAAGCGCTCTCG
EST: TCGGAGTCATGTACATTGAAACCAGTGCCAAGGCCGGATTCAACATCAAG GCTCTCTTCAGGAAAATCGCTGCGGCGTTACCGGGAATGGAAGCGCTCTCG
genomic: TCGGAGTCATGTACATTGAAACCAGTGCCAAGGCCGGATTCAACATCAAGgtatagtttt ... tttcgagcagGCTCTCTTCAGGAAAATCGCTGCGGCGTTACCGGGAATGGAAGCGCTCTCG
tatagtttttaaagtttctttcctgtcctcttacttgagagaatctttcgagcagGCTCTCTTCAGGAAAATCGCTGCGGCGTTACCGGGAATGGAAGCGCTCTCGTCCGCTAAGCAAGAAGATCTAGTGGACGTCAGCTTGAAGACAAATCCCC
ctcttac putative branch site (score: 39)
tctttc putative PPT
tttttaaagtttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatagtttttaaagtttctttcctgtcctcttacttgagagaatctttcgagcagGCTCTCTTCAGGAAAATCGCTGCGGCGTTACCGGGAATGGAAGCGCTCTCGTCCGCTAAGCAAGAAGATCTAGTGGACGTCAGCTTGAAGACAAATCCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA