1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtagattccgatcattcaaggactcttccgttgaagcttttttcagATATGCAAACAAACGAATGCCTTACGAACAATGGGGGATGCTGGCAGGACAAGAGCGCGAACGTCACCGCATGTAAA
species | Selaginella moellendorffii |
transcript | EFJ22768 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGTTCGGGTTTCCAAGAAACTACAGAGCCAGCCGTCTGTTTGAGTGAAG ATATGCAAACAAACGAATGCCTTACGAACAATGGGGGATGCTGGCAGGACAEST: gi|169096681|gb|FE496811.1|FE496811
genomic: TTGTTCGGGTTTCCAAGAAACTACAGAGCCAGCCGTCTGTTTGAGTGAAGgtagattccg ... cttttttcagATATGCAAACAAACGAATGCCTTACGAACAATGGGGGATGCTGGCAGGACA
EST: TTGTTCGGGTTTCCAAGAAACTACAGAGCCAGCCGTCTGTTTGAGTGAAG ATATGCAAACAAACGAATGCCTTACGAACAATGGGGGATGCTGGCAGGACAEST: gi|169081666|gb|FE491320.1|FE491320
genomic: TTGTTCGGGTTTCCAAGAAACTACAGAGCCAGCCGTCTGTTTGAGTGAAGgtagattccg ... cttttttcagATATGCAAACAAACGAATGCCTTACGAACAATGGGGGATGCTGGCAGGACA
EST: AGAGCCAGCCGTCTGTTTGAGTGAAG ATATGCAAACAAACGAATGCCTTTCGAACAATGGGGGATGCTGGCAGGACAEST: gi|169109250|gb|FE510230.1|FE510230
genomic: AGAGCCAGCCGTCTGTTTGAGTGAAGgtagattccg ... cttttttcagATATGCAAACAAACGAATGCCTTACGAACAATGGGGGATGCTGGCAGGACA
EST: TTGTTCGGGTTTCCAAGAAACTACAGAGCCAGCCGTCTGTTTGAGTGAAG ATATGCAAACAAACGAATGCCTTACGAACAATGGGGGATGCTGGCAGGACAEST: gi|169096537|gb|FE499449.1|FE499449
genomic: TTGTTCGGGTTTCCAAGAAACTACAGAGCCAGCCGTCTGTTTGAGTGAAGgtagattccg ... cttttttcagATATGCAAACAAACGAATGCCTTACGAACAATGGGGGATGCTGGCAGGACA
EST: TTGTTCGGGTTTCCAAGAAACTACAGAGCCAGCCGTCTGTTTGAGTGAAG ATATGCAAACAAACGAATGCCTTACGAACAATGGGGGATGCTGGCAGGACAEST: gi|169082427|gb|FE488989.1|FE488989
genomic: TTGTTCGGGTTTCCAAGAAACTACAGAGCCAGCCGTCTGTTTGAGTGAAGgtagattccg ... cttttttcagATATGCAAACAAACGAATGCCTTACGAACAATGGGGGATGCTGGCAGGACA
EST: TCGGGTTTCCAAGAAACTACAGAGCCAGCCGTCTGTTTGAGTGAAG ATATGCAAACAAACGAATGCCTTACGAACAATGGGGGATGCTGGCAGGACAEST: gi|169075666|gb|FE482052.1|FE482052
genomic: TCGGGTTTCCAAGAAACTACAGAGCCAGCCGTCTGTTTGAGTGAAGgtagattccg ... cttttttcagATATGCAAACAAACGAATGCCTTACGAACAATGGGGGATGCTGGCAGGACA
EST: TCCAAGAAACTACAGAGCCAGCCGTCTGTTTGAGTGAAG ATATGCAAACAAACGAATGCCTTACGAACAATGGGGGATGCTGGCAGGACAEST: gi|169031591|gb|FE439056.1|FE439056
genomic: TCCAAGAAACTACAGAGCCAGCCGTCTGTTTGAGTGAAGgtagattccg ... cttttttcagATATGCAAACAAACGAATGCCTTACGAACAATGGGGGATGCTGGCAGGACA
EST: TTGTTCGGGTTTCCAAGAAACTACAGAGCCAGCCGTCTGTTTGAGTGAAG ATATGCAAACAAACGAATGCCTTACGAACAATGGGGGATGCTGGCAGGACAEST: gi|169080525|gb|FE488463.1|FE488463
genomic: TTGTTCGGGTTTCCAAGAAACTACAGAGCCAGCCGTCTGTTTGAGTGAAGgtagattccg ... cttttttcagATATGCAAACAAACGAATGCCTTACGAACAATGGGGGATGCTGGCAGGACA
EST: CGGGTTTCCAAGAAACTACAGAGCCAGCCGTCTGTTTGAGTGAAG ATATGCAAACAAACGAATGCCTTACGAACAATGGGGGATGCTGGCAGGACAEST: gi|169028103|gb|FE435955.1|FE435955
genomic: CGGGTTTCCAAGAAACTACAGAGCCAGCCGTCTGTTTGAGTGAAGgtagattccg ... cttttttcagATATGCAAACAAACGAATGCCTTACGAACAATGGGGGATGCTGGCAGGACA
EST: ACAGAGCCAGCCGTCTGTTTGAGTGAAG ATATGCAAACAAACGAATGCCTTACGAACAATGGGGGATGCTGGCAGGACAEST: gi|169096682|gb|FE496812.1|FE496812
genomic: ACAGAGCCAGCCGTCTGTTTGAGTGAAGgtagattccg ... cttttttcagATATGCAAACAAACGAATGCCTTACGAACAATGGGGGATGCTGGCAGGACA
EST: TTGTTCGGGTTTCCAAGAAACTACAGAGCCAGCCGTCTGTTTGAGTGAAG ATATGCAAACAAACGAATGCCTTACGAACAATGGGGGATGCTGGCAGGACAEST: gi|169026482|gb|FE434769.1|FE434769
genomic: TTGTTCGGGTTTCCAAGAAACTACAGAGCCAGCCGTCTGTTTGAGTGAAGgtagattccg ... cttttttcagATATGCAAACAAACGAATGCCTTACGAACAATGGGGGATGCTGGCAGGACA
EST: GAAACTACAGAGCCAGCCGTCTGTTTGAGTGAAG ATATGCAAACAAACGAATGCCTTACGAACAATGGGGGATGCTGGCAGGACAEST: gi|169096538|gb|FE499450.1|FE499450
genomic: GAAACTACAGAGCCAGCCGTCTGTTTGAGTGAAGgtagattccg ... cttttttcagATATGCAAACAAACGAATGCCTTACGAACAATGGGGGATGCTGGCAGGACA
EST: TTGTTCGGGTTTCCAAGAAACTACAGAGCCAGCCGTCTGTTTGAGTGAAG ATATGCAAACAAACGAATGCCTTACGAACAATGGGGGATGCTGGCAGGACAEST: gi|169083003|gb|FE488525.1|FE488525
genomic: TTGTTCGGGTTTCCAAGAAACTACAGAGCCAGCCGTCTGTTTGAGTGAAGgtagattccg ... cttttttcagATATGCAAACAAACGAATGCCTTACGAACAATGGGGGATGCTGGCAGGACA
EST: TTGTTCGGGTTTCCAAGAAACTACAGAGCCAGCCGTCTGTTTGAGTGAAG ATATGCAAACAAACGAATGCCTTACGAACAATGGGGGATGCTGGCAGGACAEST: gi|169050286|gb|FE458353.1|FE458353
genomic: TTGTTCGGGTTTCCAAGAAACTACAGAGCCAGCCGTCTGTTTGAGTGAAGgtagattccg ... cttttttcagATATGCAAACAAACGAATGCCTTACGAACAATGGGGGATGCTGGCAGGACA
EST: TTGTTCGGGTTTCCAAGAAACTACAGAGCCAGCCGTCTGTTTGAGTGAAG ATATGCAAACAAACGAATGCCTTACGAACAATGGGGGATGCTGGCAGGACAEST: gi|169081076|gb|FE486141.1|FE486141
genomic: TTGTTCGGGTTTCCAAGAAACTACAGAGCCAGCCGTCTGTTTGAGTGAAGgtagattccg ... cttttttcagATATGCAAACAAACGAATGCCTTACGAACAATGGGGGATGCTGGCAGGACA
EST: TGTTCGGGTTTTCCA-GAAACTACAGAGCCAGCCGTCTGTTTGAGTGAAG ATATGCAAACAAACGAATGCCTTACEST: gi|169114821|gb|FE516082.1|FE516082
genomic: TGTTCGGGTTT-CCAAGAAACTACAGAGCCAGCCGTCTGTTTGAGTGAAGgtagattccg ... cttttttcagATATGCAAACAAACGAATGCCTTAC
EST: TTGTTCGGGTTTCCAAGAAACTACAGAGCCAGCCGTCTGTTTGAGTGAAG ATATGCAAACAAACGAATGCCTTACGAACAATGGGGGATGCTGGCAGGACAEST: gi|169080940|gb|FE486109.1|FE486109
genomic: TTGTTCGGGTTTCCAAGAAACTACAGAGCCAGCCGTCTGTTTGAGTGAAGgtagattccg ... cttttttcagATATGCAAACAAACGAATGCCTTACGAACAATGGGGGATGCTGGCAGGACA
EST: GTTTCCAAGAAACTACAGAGCCAGCCGTCTGTTTGAGTGAAG ATATGCAAACAAACGAATGCCTTACGAACAATGGGGGATGCTGGCAGGACA
genomic: GTTTCCAAGAAACTACAGAGCCAGCCGTCTGTTTGAGTGAAGgtagattccg ... cttttttcagATATGCAAACAAACGAATGCCTTACGAACAATGGGGGATGCTGGCAGGACA
gtagattccgatcattcaaggactcttccgttgaagcttttttcagATATGCAAACAAACGAATGCCTTACGAACAATGGGGGATGCTGGCAGGACAAGAGCGCGAACGTCACCGCATGTAAA
cttttttc CT-rich tract
ttttttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagattccgatcattcaaggactcttccgttgaagcttttttcagATATGCAAACAAACGAATGCCTTACGAACAATGGGGGATGCTGGCAGGACAAGAGCGCGAACGTCACCGCATGTAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG