1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagagatttcagtctgttatcagttaagagttgtgatcattttttccttagGACTGCCAATAAGTTAGAGTGGACTGCTACATATTGGATTCTTGGAGAGAAGGGCTACATGTCTAAAGATGCTATCAGGGCAGTCTACGATGGGAGTGTT
species | Selaginella moellendorffii |
transcript | EFJ21670 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATCATTGCGATGACTCAAGGCCAAAGAGATGCGTTTGACCTGTTTGGATG GACTGCCAATAAGTTAGAGTGGACTGCTACATATTGGATTCTTGGAGAGAAEST: gi|169035490|gb|FE442881.1|FE442881
genomic: ATCATTGCGATGACTCAAGGCCAAAGAGATGCGTTTGACCTGTTTGGATGgtaagagatt ... ttttccttagGACTGCCAATAAGTTAGAGTGGACTGCTACATATTGGATTCTTGGAGAGAA
EST: ATCATTGCGATGACTCAAGGCCAAAGAGATGCGTTTGACCTGTTTGGATG GACTGCCAATAAGTTAGAGTGGACTGCTACATATTGGATTCTTGGAGAGAAEST: gi|169035491|gb|FE442882.1|FE442882
genomic: ATCATTGCGATGACTCAAGGCCAAAGAGATGCGTTTGACCTGTTTGGATGgtaagagatt ... ttttccttagGACTGCCAATAAGTTAGAGTGGACTGCTACATATTGGATTCTTGGAGAGAA
EST: ATCATTGCGATGACTCAAGGCCAAAGAGATGCGTTTGACCTGTTTGGATG GACTGCCAATAAGTTAGAGTGGACTGCTACATATTGGATTCTTGGAGAGAAEST: gi|169037479|gb|FE443347.1|FE443347
genomic: ATCATTGCGATGACTCAAGGCCAAAGAGATGCGTTTGACCTGTTTGGATGgtaagagatt ... ttttccttagGACTGCCAATAAGTTAGAGTGGACTGCTACATATTGGATTCTTGGAGAGAA
EST: ATCATTGCGATGACTCAAGGCCAAAGAGATGCGTTTGACCTGTTTGGATG GACTGCCAATAAGTTAGAGTGGACTGCTACATATTGGATTCTTGGAGAGAAEST: gi|169056882|gb|FE466460.1|FE466460
genomic: ATCATTGCGATGACTCAAGGCCAAAGAGATGCGTTTGACCTGTTTGGATGgtaagagatt ... ttttccttagGACTGCCAATAAGTTAGAGTGGACTGCTACATATTGGATTCTTGGAGAGAA
EST: ATCATTGCGATGACTCAAGGCCAAAGAGATGCGTTTGACCTGTTTGGATG GACTGCCAATAAGTTAGAGTGGACTGCTACATATTGGATTCTTGGAGAGAAEST: gi|169078644|gb|FE487076.1|FE487076
genomic: ATCATTGCGATGACTCAAGGCCAAAGAGATGCGTTTGACCTGTTTGGATGgtaagagatt ... ttttccttagGACTGCCAATAAGTTAGAGTGGACTGCTACATATTGGATTCTTGGAGAGAA
EST: ATCATTGCGATGACTCAAGGCCAAAGAGATGCGTTTGACCTGTTTGGATG GACTGCCAATAAGTTAGAGTGGACTGCTACATATTGGATTCTTGGAGAGAAEST: gi|169056883|gb|FE466461.1|FE466461
genomic: ATCATTGCGATGACTCAAGGCCAAAGAGATGCGTTTGACCTGTTTGGATGgtaagagatt ... ttttccttagGACTGCCAATAAGTTAGAGTGGACTGCTACATATTGGATTCTTGGAGAGAA
EST: ATCATTGCGATGACTCAAGGCCAAAGAGATGCGTTTGACCTGTTTGGATG GACTGCCAATAAGTTAGAGTGGACTGCTACATATTGGATTCTTGGAGAGAAEST: gi|169037480|gb|FE443348.1|FE443348
genomic: ATCATTGCGATGACTCAAGGCCAAAGAGATGCGTTTGACCTGTTTGGATGgtaagagatt ... ttttccttagGACTGCCAATAAGTTAGAGTGGACTGCTACATATTGGATTCTTGGAGAGAA
EST: ATCATTGCGATGACTCAAGGCCAAAGAGATGCGTTTGACCTGTTTGGATG GACTGCCAATAAGTTAGAGTGGACTGCTACATATTGGATTCTT
genomic: ATCATTGCGATGACTCAAGGCCAAAGAGATGCGTTTGACCTGTTTGGATGgtaagagatt ... ttttccttagGACTGCCAATAAGTTAGAGTGGACTGCTACATATTGGATTCTT
gtaagagatttcagtctgttatcagttaagagttgtgatcattttttccttagGACTGCCAATAAGTTAGAGTGGACTGCTACATATTGGATTCTTGGAGAGAAGGGCTACATGTCTAAAGATGCTATCAGGGCAGTCTACGATGGGAGTGTT
tcattttttcctt CT-rich tract
atcatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagagatttcagtctgttatcagttaagagttgtgatcattttttccttagGACTGCCAATAAGTTAGAGTGGACTGCTACATATTGGATTCTTGGAGAGAAGGGCTACATGTCTAAAGATGCTATCAGGGCAGTCTACGATGGGAGTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG