1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaacacttctttccaaagaagacgaacagattatagcaaacactctttgctttgtagGTGATTTGCGATCGACACTTCGGAGGGATCAACTATCCCGTTGGAGGTGTTGGATTGATAGCACAAGAGCTGGCAGACGGCCTGATTGAGAGAGGAGGCG
species | Selaginella moellendorffii |
transcript | EFJ21638 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCGTCAGTACCGTCGACGCGTTGTGTACACCAATGATCAATGCGAGCATG GTGATTTGCGATCGACACTTCGGAGGGATCAACTATCCCGTTGEST: gi|169027211|gb|FE435082.1|FE435082
genomic: TCGTCAGTACCGTCGACGCGTTGTGTACACCAATGATCAATGCGAGCATGgtaacacttc ... tgctttgtagGTGATTTGCGATCGACACTTCGGAGGGATCAACTATCCCGTTG
EST: TCGTCAGTACCGTCGACGCGTTGTGTACACCAATGATCAATGCGAGCATG GTGATTTGCGATCGACACTTCGGAGGGATCAACTATCCCGTTGGAGGTGTTEST: gi|169048503|gb|FE455737.1|FE455737
genomic: TCGTCAGTACCGTCGACGCGTTGTGTACACCAATGATCAATGCGAGCATGgtaacacttc ... tgctttgtagGTGATTTGCGATCGACACTTCGGAGGGATCAACTATCCCGTTGGAGGTGTT
EST: TCGTCAGTACCGTCGACGCGTTGTGTACACCAATGATCAATGCGAGCATG GTGATTTGCGATCGACACTTCGGAGGGATCAACTATCCCGTTGGAGGTGTC
genomic: TCGTCAGTACCGTCGACGCGTTGTGTACACCAATGATCAATGCGAGCATGgtaacacttc ... tgctttgtagGTGATTTGCGATCGACACTTCGGAGGGATCAACTATCCCGTTGGAGGTGTT
acacttctttccaaagaagacgaacagattatagcaaacactctttgctttgtagGTGATTTGCGATCGACACTTCGGAGGGATCAACTATCCCGTTGGAGGTGTTGGATTGATAGCACAAGAGCTGGCAGACGGCCTGATTGAGAGAGGAGGCG
ctctttgcttt CT-rich tract
agattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacacttctttccaaagaagacgaacagattatagcaaacactctttgctttgtagGTGATTTGCGATCGACACTTCGGAGGGATCAACTATCCCGTTGGAGGTGTTGGATTGATAGCACAAGAGCTGGCAGACGGCCTGATTGAGAGAGGAGGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG