1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtcagaattgacagcaaatgatcatataagtttttcctgattgaatgaagacctccagATTGGAGCAAAACTACAATCCCTGAAAGGACTTGAGGCGCGACTGAAGGAGATACGCGCATACTTGGACAACGTTGTTGAAGGCCGATTACCATTGAATC
species | Selaginella moellendorffii |
transcript | EFJ21414 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATTTGCTACGAGATGTGAAGGATGCTACCGTATCGACACTCGCTACCGAG ATTGGAGCAAAACTACAATCCCTGAAAGGACTTGAGGCGCGACTGAAGGAGEST: gi|169103938|gb|FE504275.1|FE504275
genomic: ATTTGCTACGAGATGTGAAGGATGCTACCGTATCGACACTCGCTACCGAGgtcagaattg ... agacctccagATTGGAGCAAAACTACAATCCCTGAAAGGACTTGAGGCGCGACTGAAGGAG
EST: ATTTGCTACGAGATGTGAAGGATGCTACCGTATCGACACTCGCTACCGAG ATTGGAGCAAAACTACAATCCCTGAAAGGACTTGAGGCGCGACTGAAGGAGEST: gi|169103939|gb|FE504276.1|FE504276
genomic: ATTTGCTACGAGATGTGAAGGATGCTACCGTATCGACACTCGCTACCGAGgtcagaattg ... agacctccagATTGGAGCAAAACTACAATCCCTGAAAGGACTTGAGGCGCGACTGAAGGAG
EST: ATTTGCTACGAGATGTGAAGGATGCTACCGTATCGACACTCGCTACCGAG ATTGGAGCAAAACTACAATCCCTGAAAGGACTTGAGGCGCGACTGAAGGAGEST: gi|169057078|gb|FE464134.1|FE464134
genomic: ATTTGCTACGAGATGTGAAGGATGCTACCGTATCGACACTCGCTACCGAGgtcagaattg ... agacctccagATTGGAGCAAAACTACAATCCCTGAAAGGACTTGAGGCGCGACTGAAGGAG
EST: ATTTGCTACGAGATGTGAAGGATGCTACCGTATCGACACTCGCTACCGAG ATTGGAGCANAACTACAATCCCTGAAAGGACTTGAGGCGCGACTGAAGGAGEST: gi|169063914|gb|FE471269.1|FE471269
genomic: ATTTGCTACGAGATGTGAAGGATGCTACCGTATCGACACTCGCTACCGAGgtcagaattg ... agacctccagATTGGAGCAAAACTACAATCCCTGAAAGGACTTGAGGCGCGACTGAAGGAG
EST: ATTTGCTACGAGATGTGAAGGATGCTACCGTATCGACACTCGCTACCGAG ATTGGAGCAAAACTACAATCCCTGAAAGGACTTGAGGCGCGACTGAAGGAGEST: gi|169057077|gb|FE464133.1|FE464133
genomic: ATTTGCTACGAGATGTGAAGGATGCTACCGTATCGACACTCGCTACCGAGgtcagaattg ... agacctccagATTGGAGCAAAACTACAATCCCTGAAAGGACTTGAGGCGCGACTGAAGGAG
EST: ATTTGCTACGAGATGTGAAGGATGCTACCGTATCGACACTCGCTACCGAG ATTGGAGCAAAACTACAATCCCTGAAAGGACTTGAGGCGCGACTGAAGGAG
genomic: ATTTGCTACGAGATGTGAAGGATGCTACCGTATCGACACTCGCTACCGAGgtcagaattg ... agacctccagATTGGAGCAAAACTACAATCCCTGAAAGGACTTGAGGCGCGACTGAAGGAG
agaattgacagcaaatgatcatataagtttttcctgattgaatgaagacctccagATTGGAGCAAAACTACAATCCCTGAAAGGACTTGAGGCGCGACTGAAGGAGATACGCGCATACTTGGACAACGTTGTTGAAGGCCGATTACCATTGAATC
tcctgat putative branch site (score: 36)
cctcc putative PPT
atcatataagttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagaattgacagcaaatgatcatataagtttttcctgattgaatgaagacctccagATTGGAGCAAAACTACAATCCCTGAAAGGACTTGAGGCGCGACTGAAGGAGATACGCGCATACTTGGACAACGTTGTTGAAGGCCGATTACCATTGAATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG