1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtagctctactcggattgatttggtgtatgacagacagaagtttgcttttgttcttgtgcagTTTGTTTCTGATGTGACCAAGTATATAAGTGGATGCCTGTCGTCCTTGTCTGCTATGGTCCAACTCGAGCTTCCTCATGTGAATGTCCTCACGAAGATGG
species | Selaginella moellendorffii |
transcript | EFJ18832 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTAAGCGCTGGGATTTTAATCTGTGCGCTGTCTACCTCCTTGATTCTCAG TTTGTTTCTGATGTGACCAAGTATATAAGTGGATGCCTGTCGTCCTTGTCTEST: gi|169057119|gb|FE464149.1|FE464149
genomic: TTAAGCGCTGGGATTTTAATCTGTGCGCTGTCTACCTCCTTGATTCTCAGgtagctctac ... tcttgtgcagTTTGTTTCTGATGTGACCAAGTATATAAGTGGATGCCTGTCGTCCTTGTCT
EST: TTAAGCGCTGGGATTTTAATCTGTGCGCTGTCTACCTCCTTGATTCTCAG TTTGTTTCTGATGTTACCAAGTATATAAGTGGATGCCTGTCGTCCTTGTCTEST: gi|169057120|gb|FE464150.1|FE464150
genomic: TTAAGCGCTGGGATTTTAATCTGTGCGCTGTCTACCTCCTTGATTCTCAGgtagctctac ... tcttgtgcagTTTGTTTCTGATGTGACCAAGTATATAAGTGGATGCCTGTCGTCCTTGTCT
EST: TTAAGCGCTGGGATTTTAATCTGTGCGCTGTCTACCTCCTTGATTCTCAG TTTGTTTCTGATGTTACCAAGTATATAAGTGGATGCCTGTCGTCCTTGTCT
genomic: TTAAGCGCTGGGATTTTAATCTGTGCGCTGTCTACCTCCTTGATTCTCAGgtagctctac ... tcttgtgcagTTTGTTTCTGATGTGACCAAGTATATAAGTGGATGCCTGTCGTCCTTGTCT
tactcggattgatttggtgtatgacagacagaagtttgcttttgttcttgtgcagTTTGTTTCTGATGTGACCAAGTATATAAGTGGATGCCTGTCGTCCTTGTCTGCTATGGTCCAACTCGAGCTTCCTCATGTGAATGTCCTCACGAAGATGG
gattgat putative branch site (score: 1)
tttgcttttgttctt putative PPT
attgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagctctactcggattgatttggtgtatgacagacagaagtttgcttttgttcttgtgcagTTTGTTTCTGATGTGACCAAGTATATAAGTGGATGCCTGTCGTCCTTGTCTGCTATGGTCCAACTCGAGCTTCCTCATGTGAATGTCCTCACGAAGATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG