Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatggttttctaagcttttggaagctttgtgcttacgagcgttcgtgtttacagGTGTGCAGATATGGTTTCTGGCCATCATCTACATCCTGGCAGGCTTTCCCGGATCATATTTCCTTTGGTACAGGCCCCTGTATCGGGCTATGAG

Basic information

species Selaginella moellendorffii
transcript EFJ18540
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169105292|gb|FE507629.1|FE507629
EST:     CATTTCCATCACCGGAGCCTGGATCCAGAAGACTGTCAGTGCCTCGTATG                         GTGTGCAGATATGGTTTCTGGCCATCATCTACATCCTGGCAGGCTT
genomic: CATTTCCATCACCGGAGCCTGGATCCAGAAGACTGTCAGTGCCTCGTATGgtaatggttt ... gtgtttacagGTGTGCAGATATGGTTTCTGGCCATCATCTACATCCTGGCAGGCTT
EST: gi|169105684|gb|FE508450.1|FE508450
EST:     CATTTCCGTCACCGGAGCCTGGATCCAGAAGACTGTCAGTGCCTCGTATG                         GTGTGCAGATATGGTTTCTGGCCATCATCTACATCCTGGCAGGCTTTCCCG
genomic: CATTTCCATCACCGGAGCCTGGATCCAGAAGACTGTCAGTGCCTCGTATGgtaatggttt ... gtgtttacagGTGTGCAGATATGGTTTCTGGCCATCATCTACATCCTGGCAGGCTTTCCCG
EST: gi|169045117|gb|FE450948.1|FE450948
EST:     CATTTCCGTCACCGGAGCCTGGATCCAGAAGACTGTCAGTGCCTCGTATG                         GTGTGCAGATATGGTTTCTGGCCATCATCTACATCCTGGCAGGCTTTCCCG
genomic: CATTTCCATCACCGGAGCCTGGATCCAGAAGACTGTCAGTGCCTCGTATGgtaatggttt ... gtgtttacagGTGTGCAGATATGGTTTCTGGCCATCATCTACATCCTGGCAGGCTTTCCCG
EST: gi|169107453|gb|FE509141.1|FE509141
EST:     CATTTCCGTCACCGGAGCCTGGATCCAGAAGACTGTCAGTGCCTCGTATG                         GTGTGCAGATATGGTTTCTGGCCATCATCTACATCCTGGCAGGCTTTCCCG
genomic: CATTTCCATCACCGGAGCCTGGATCCAGAAGACTGTCAGTGCCTCGTATGgtaatggttt ... gtgtttacagGTGTGCAGATATGGTTTCTGGCCATCATCTACATCCTGGCAGGCTTTCCCG
EST: gi|169113212|gb|FE515186.1|FE515186
EST:     CATTTCCATCACCGGAGCCTGGATCCAGAAGACTGTCAGTGCCTCGTATG                         GTGTGCAGATATGGTTTCTGGCCATCATCTACATCCTGGCAGGCTTTCCCG
genomic: CATTTCCATCACCGGAGCCTGGATCCAGAAGACTGTCAGTGCCTCGTATGgtaatggttt ... gtgtttacagGTGTGCAGATATGGTTTCTGGCCATCATCTACATCCTGGCAGGCTTTCCCG
EST: gi|169107452|gb|FE509140.1|FE509140
EST:     CATTTCCGTCACCGGAGCCTGGATCCAGAAGACTGTCAGTGCCTCGTATG                         GTGTGCAGATATGGTTTCTGGCCATCATCTACATCCTGGCAGGCTTTCCCG
genomic: CATTTCCATCACCGGAGCCTGGATCCAGAAGACTGTCAGTGCCTCGTATGgtaatggttt ... gtgtttacagGTGTGCAGATATGGTTTCTGGCCATCATCTACATCCTGGCAGGCTTTCCCG
EST: gi|169105291|gb|FE507628.1|FE507628
EST:     CATTTCCATCACCGGAGCCTGGATCCAGAAGACTGTCAGTGCCTCGTATG                         GTGTGCAGATATGGTTTCTGGCCATCATCTACATCCTGGCAGGCTTTCCCG
genomic: CATTTCCATCACCGGAGCCTGGATCCAGAAGACTGTCAGTGCCTCGTATGgtaatggttt ... gtgtttacagGTGTGCAGATATGGTTTCTGGCCATCATCTACATCCTGGCAGGCTTTCCCG
EST: gi|169102152|gb|FE505778.1|FE505778
EST:     CATTTCCGTCACCGGAGCCTGGATCCAGAAGACTGTCAGTGCCTCGTATG                         GTGTGCAGATATGGTTTCTGGCCATCATCTACATCCTGGCAGGCTTTCCCG
genomic: CATTTCCATCACCGGAGCCTGGATCCAGAAGACTGTCAGTGCCTCGTATGgtaatggttt ... gtgtttacagGTGTGCAGATATGGTTTCTGGCCATCATCTACATCCTGGCAGGCTTTCCCG
EST: gi|169105683|gb|FE508449.1|FE508449
EST:     CATTTCCGTCACCGGAGCCTGGATCCAGAAGACTGTCAGTGCCTCGTATG                         GTGTGCAGATATGGTTTCTGGCCATCATCTACATCCTGGCAGGCTTTCCCG
genomic: CATTTCCATCACCGGAGCCTGGATCCAGAAGACTGTCAGTGCCTCGTATGgtaatggttt ... gtgtttacagGTGTGCAGATATGGTTTCTGGCCATCATCTACATCCTGGCAGGCTTTCCCG
EST: gi|169049667|gb|FE457759.1|FE457759
EST:     CATTTCCGTCACCGGAGCCTGGATCCAGAAGACTGTCAGTGCCTCGTATG                         GTGTGCAGATATGGTTTCTGGCCATCATCTACATCCTGGCAGGCTTTCCCG
genomic: CATTTCCATCACCGGAGCCTGGATCCAGAAGACTGTCAGTGCCTCGTATGgtaatggttt ... gtgtttacagGTGTGCAGATATGGTTTCTGGCCATCATCTACATCCTGGCAGGCTTTCCCG
EST: gi|169052782|gb|FE463565.1|FE463565
EST:     CATTTCCGTCACCGGAGCCTGGATCCAGAAGACTGTCAGTGCCTCGTATG                         GTGTGCAGATATGGTTTCTGGCCATCATCTACATCCTGGCAGGCTTTCCCG
genomic: CATTTCCATCACCGGAGCCTGGATCCAGAAGACTGTCAGTGCCTCGTATGgtaatggttt ... gtgtttacagGTGTGCAGATATGGTTTCTGGCCATCATCTACATCCTGGCAGGCTTTCCCG
EST: gi|169051998|gb|FE460337.1|FE460337
EST:     CATTTCCGTCACCGGAGCCTGGATCCAGAAGACTGTCAGTGCCTCGTATG                         GTGTGCAGATATGGTTTCTGGCCATCATCTACATCCTGGCA
genomic: CATTTCCATCACCGGAGCCTGGATCCAGAAGACTGTCAGTGCCTCGTATGgtaatggttt ... gtgtttacagGTGTGCAGATATGGTTTCTGGCCATCATCTACATCCTGGCA
EST: gi|169049666|gb|FE457758.1|FE457758
EST:     CATTTCCGTCACCGGAGCCTGGATCCAGAAGACTGTCAGTGCCTCGTATG                         GTGTGCAGATATGGTTTCTGGCCATCATCTACATCCTGGCAGGCTTTCCCG
genomic: CATTTCCATCACCGGAGCCTGGATCCAGAAGACTGTCAGTGCCTCGTATGgtaatggttt ... gtgtttacagGTGTGCAGATATGGTTTCTGGCCATCATCTACATCCTGGCAGGCTTTCCCG
EST: gi|169102153|gb|FE505779.1|FE505779
EST:     CATTTCCGTCACCGGAGCCTGGATCCAGAAGACTGTCAGTGCCTCGTATG                         GTGTGCAGATATGGTTTCTGGCCATCATCTACATCCTGGCAGGCTTTCCCG
genomic: CATTTCCATCACCGGAGCCTGGATCCAGAAGACTGTCAGTGCCTCGTATGgtaatggttt ... gtgtttacagGTGTGCAGATATGGTTTCTGGCCATCATCTACATCCTGGCAGGCTTTCCCG
EST: gi|169051997|gb|FE460336.1|FE460336
EST:     CATTTCCGTCACCGGAGCCTGGATCCAGAAGACTGTCAGTGCCTCGTATG                         GTGTGCAGATATGGTTTCTGGCCATCATCTACATCCTGGCAGGCTTTCCCG
genomic: CATTTCCATCACCGGAGCCTGGATCCAGAAGACTGTCAGTGCCTCGTATGgtaatggttt ... gtgtttacagGTGTGCAGATATGGTTTCTGGCCATCATCTACATCCTGGCAGGCTTTCCCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 33 (upstream exon), 33 (downstream exon)
Score: 26

TTTGCTTACGGAAGCTGGCTCGGAATTCTCCTGTGCCTGACATGGAACTTCATTTCCATCACCGGAGCCTGGATCCAGAAGACTGTCAGTGCCTCGTATGgtaatggttt ... gtgtttacagGTGTGCAGATATGGTTTCTGGCCATCATCTACATCCTGGCAGGCTTTCCCGGATCATATTTCCTTTGGTACAGGCCCCTGTATCGGGCTATGAG




<











<


<











 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatggttttctaagcttttggaagctttgtgcttacgagcgttcgtgtttacagGTGTGCAGATATGGTTTCTGGCCATCATCTACATCCTGGCAGGCTTTCCCGGATCATATTTCCTTTGGTACAGGCCCCTGTATCGGGCTATGAG
                              tgcttac  putative branch site (score: 26)
      ttttctaa  TA-rich tract