1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttctttgagtgttcttttgttctatcactctcttatcattctgtcttttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCAGG
species | Selaginella moellendorffii |
transcript | EFJ18071 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCAEST: gi|169027575|gb|FE432749.1|FE432749
genomic: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: AGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCAEST: gi|169030243|gb|FE440579.1|FE440579
genomic: AGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCAEST: gi|169031370|gb|FE441186.1|FE441186
genomic: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCAEST: gi|169040841|gb|FE447892.1|FE447892
genomic: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: CAGCCAACTTTCACTTTCAATTTTTCCAAAG GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCAEST: gi|169066369|gb|FE473045.1|FE473045
genomic: CAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: CAATTATCTTGGGGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCAEST: gi|169026893|gb|FE434244.1|FE434244
genomic: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: CAATTATCTTGGGGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCAEST: gi|169108571|gb|FE510786.1|FE510786
genomic: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCAEST: gi|169072349|gb|FE480248.1|FE480248
genomic: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCAEST: gi|169093054|gb|FE494165.1|FE494165
genomic: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: CAATTATCTTGGGGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCAEST: gi|169030182|gb|FE437086.1|FE437086
genomic: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: TTTTTCCAAAG GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCAEST: gi|169043268|gb|FE451270.1|FE451270
genomic: TTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCAEST: gi|169019232|gb|FE428145.1|FE428145
genomic: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCAEST: gi|169045969|gb|FE451240.1|FE451240
genomic: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCAEST: gi|169049329|gb|FE458240.1|FE458240
genomic: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCAEST: gi|169064341|gb|FE471904.1|FE471904
genomic: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCAEST: gi|169080212|gb|FE488384.1|FE488384
genomic: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: CAATTATCTTGGGGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCAEST: gi|169030244|gb|FE440580.1|FE440580
genomic: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCAEST: gi|169042691|gb|FE451510.1|FE451510
genomic: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: AGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCAEST: gi|169054362|gb|FE460807.1|FE460807
genomic: AGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: CAATTATCTTGGGGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCAEST: gi|169034081|gb|FE442802.1|FE442802
genomic: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: GAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCAEST: gi|169075986|gb|FE482853.1|FE482853
genomic: GAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCAEST: gi|169025801|gb|FE433100.1|FE433100
genomic: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: GCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCAEST: gi|169075460|gb|FE483094.1|FE483094
genomic: GCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: GCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCAEST: gi|169060993|gb|FE470623.1|FE470623
genomic: GCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCAEST: gi|169027576|gb|FE432750.1|FE432750
genomic: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCAEST: gi|169098883|gb|FE502280.1|FE502280
genomic: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: CAATTATCTTGGGGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCAEST: gi|169098884|gb|FE502281.1|FE502281
genomic: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
EST: CAATTATCTTGGGGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAG GTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
genomic: CAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttctttgag ... tttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCA
tctttgagtgttcttttgttctatcactctcttatcattctgtcttttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCAGG
ctctcttatcattctg CT-rich tract
ttatcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttctttgagtgttcttttgttctatcactctcttatcattctgtcttttaccacagGTGCTAGTCAGATTATAGCTCAGTATTACCAGCTCATTCGTCTCGGCTTCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA