Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggagtggcctagaagtgagcatggcttgctcattcggtttcttagCAGGACAAGTACATGCAAAATCGATTGGTGAGACTGGTGTGCGTCTTTTTGACGAGCCTCATTCGCAATAGAATCATAAACG

Basic information

species Selaginella moellendorffii
transcript EFJ17749
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ17749 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: PP1S166_16V6.2 (Physcomitrella patens), 3'ss of exon 10
----------------------------------------gtaggagtggcctagaagtgagcatggcttgctcattcggtttcttag-
                                               | |  |  |  | | |||    |    |||  |||   ||     |||||||||||||||||||| ||  ||||  |||||||||| |||||||||   ||| | ||||| || |  || || || |
gttcggttttctaactcgtgctttgtgggtgggttgattcaatattcttgtgtcaatctcatcattaactaacaattacgttgtgtattgttcagGACAAGTACATGCAAAACCGTCTGGTTCGACTGGTGTGTGTCTTTTTGCAAAGCTTGATTCGAAACAAGATAATCAATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaggagtggcctagaagtgagcatggcttgctcattcggtttcttagCAGGACAAGTACATGCAAAATCGATTGGTGAGACTGGTGTGCGTCTTTTTGACGAGCCTCATTCGCAATAGAATCATAAACG
                                                     tttctt  CT-rich tract
                                               tttctta  TA-rich tract