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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttgcaggcaactgattgctatgtttttttacgttcttttagtttggcagATATGTGATTGCGTTCATTTTATTGGTGAAACTAAACGAAGTTGCTGTCCTGATCCCGCCTGATATATCAAGACTGGGCCTAAGACGTTTTTTTTCGTCT

Basic information

species Selaginella moellendorffii
transcript EFJ17255
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169076525|gb|FE485061.1|FE485061
EST:     TCTTTTGGATATGGAGTTACCGGGGCAGCTGTGGCAACAGTCGTGTCACA                         ATATGTGATTGCGTTCATTTTATTGGTGAAACTAAACGAAGTTGCTGTCCT
genomic: TCTTTTGGATATGGAGTTACCGGGGCAGCTGTGGCAACAGTCGTGTCACAgtgagttgca ... agtttggcagATATGTGATTGCGTTCATTTTATTGGTGAAACTAAACGAAGTTGCTGTCCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgagttgcaggcaactgattgctatgtttttttacgttcttttagtttggcagATATGTGATTGCGTTCATTTTATTGGTGAAACTAAACGAAGTTGCTGTCCTGATCCCGCCTGATATATCAAGACTGGGCCTAAGACGTTTTTTTTCGTCT
              aactgat  putative branch site (score: 3)
                                      ttctttta  putative PPT
                        tatgttttttta  TA-rich tract