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gcaagtaggcgctttttgcatctttgtttcttcttacaagcttcgctactgtctagGTGCCCGGAACATTGAGATTTGTTCTTGATGGAGAAATGCCGTCATATTTGCTGGCCAAGGATTTGATACTGCAG
species | Selaginella moellendorffii |
transcript | EFJ16666 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAAACACCGATGCTGGTTTCATCATGGGAACTGGAAAAATTTTACTAAAG GTGCCCGGAACATTGAGATTTGTTCTTGATGGAGAAATGCCGTCATATTTGEST: gi|169111212|gb|FE511372.1|FE511372
genomic: GAAACACCGATGCTGGTTTCATCATGGGAACTGGAAAAATTTTACTAAAGgcaagtaggc ... tactgtctagGTGCCCGGAACATTGAGATTTGTTCTTGATGGAGAAATGCCGTCATATTTG
EST: GAAACACCGATGCTGGTTTCATCATGGGAACTGGAAAAATTTTACTAAAG GTGCCCGGAACATTGCGATTTGTTCTTGATGGAGAAATGCCGTCATATTTGEST: gi|169111148|gb|FE509592.1|FE509592
genomic: GAAACACCGATGCTGGTTTCATCATGGGAACTGGAAAAATTTTACTAAAGgcaagtaggc ... tactgtctagGTGCCCGGAACATTGAGATTTGTTCTTGATGGAGAAATGCCGTCATATTTG
EST: GAAACACCGATGCTGGTTTCATCATGGGAACTGGAAAAATTTTACTAAAG GTGCCCGGAACATTGAGATTTGTTCTTGATGGAGAAATGCCGTCATATTTGEST: gi|169035259|gb|FE442611.1|FE442611
genomic: GAAACACCGATGCTGGTTTCATCATGGGAACTGGAAAAATTTTACTAAAGgcaagtaggc ... tactgtctagGTGCCCGGAACATTGAGATTTGTTCTTGATGGAGAAATGCCGTCATATTTG
EST: GANACACCGATGCTGGTTTCATCATGGGAACTGGAAAAATTTTACTAAAG GTGCCCGGAACATTGCGATTTGTTCTTGATGGAGAAATGCCGTCATATTTG
genomic: GAAACACCGATGCTGGTTTCATCATGGGAACTGGAAAAATTTTACTAAAGgcaagtaggc ... tactgtctagGTGCCCGGAACATTGAGATTTGTTCTTGATGGAGAAATGCCGTCATATTTG
caagtaggcgctttttgcatctttgtttcttcttacaagcttcgctactgtctagGTGCCCGGAACATTGAGATTTGTTCTTGATGGAGAAATGCCGTCATATTTGCTGGCCAAGGATTTGATACTGCAG
ttcttac putative branch site (score: 23)
cttcgct putative PPT
tttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagtaggcgctttttgcatctttgtttcttcttacaagcttcgctactgtctagGTGCCCGGAACATTGAGATTTGTTCTTGATGGAGAAATGCCGTCATATTTGCTGGCCAAGGATTTGATACTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG