1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtacctaggattgaggaacagcgtcgtttctcatgccttcttgttgtttcagGAATTTAGACCGGTTCCAAACAGGAAGCAGATTGGCATTTGTTTCAAGGCGGACCAGAAGTTGGTGTTAGAATCCCTGGAG
species | Selaginella moellendorffii |
transcript | EFJ16329 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACACCAAACTTGTGGCTTCACGAAATTTACCCGAGCCCATCCTTGTAGAG GAATTTAGACCGGTTCCAAACAGNAAGCAGATTGGCATTTGTTTCAAGGCGEST: gi|169039372|gb|FE447240.1|FE447240
genomic: ACACCAAACTTGTGGCTTCACGAAATTTACCCGAGCCCATCCTTGTAGAGgtacctagga ... gttgtttcagGAATTTAGACCGGTTCCAAACAGGAAGCAGATTGGCATTTGTTTCAAGGCG
EST: ACACCAAACTTGTGGCTTCACGAAATTTACCCGAGCCCATCCTTGTAGAG GAATTTAGACCGGTTCCAAACAGGAAGCAGATTGGCATTTGTTTCAAGGCGEST: gi|169108315|gb|FE511960.1|FE511960
genomic: ACACCAAACTTGTGGCTTCACGAAATTTACCCGAGCCCATCCTTGTAGAGgtacctagga ... gttgtttcagGAATTTAGACCGGTTCCAAACAGGAAGCAGATTGGCATTTGTTTCAAGGCG
EST: TCACGAAATTTACCCGAGCCCATCCTTGTAGAG GAATTTAGACCGGTTCCAAACAGGAAGCAGATTGGCA-TTGTTTCAAGGCGEST: gi|169037417|gb|FE445508.1|FE445508
genomic: TCACGAAATTTACCCGAGCCCATCCTTGTAGAGgtacctagga ... gttgtttcagGAATTTAGACCGGTTCCAAACAGGAAGCAGATTGGCATTTGTTTCAAGGCG
EST: ACACCAAACTTGTGGCTTCACGAAATTTACCCGAGCCCATCCTTGTAGAG GAATTTAGACCGGTTCCAAACAGGAAGCAGATTGGCATTTGTTTCAEST: gi|169075797|gb|FE482794.1|FE482794
genomic: ACACCAAACTTGTGGCTTCACGAAATTTACCCGAGCCCATCCTTGTAGAGgtacctagga ... gttgtttcagGAATTTAGACCGGTTCCAAACAGGAAGCAGATTGGCATTTGTTTCA
EST: ACACCAAACTTGTGGCTTCACGAAATTTACCCGAGCCCATCCTTGTAGAG GAATTTAGACCGGTTCCAAACAGGAAGCAGATTGGCATTTGTTTCAAGGCGEST: gi|169028252|gb|FE434051.1|FE434051
genomic: ACACCAAACTTGTGGCTTCACGAAATTTACCCGAGCCCATCCTTGTAGAGgtacctagga ... gttgtttcagGAATTTAGACCGGTTCCAAACAGGAAGCAGATTGGCATTTGTTTCAAGGCG
EST: ACACCAAACTTGTGGCTTCACGAAATTTACCCGAGCCCATCCTTGTAGAG GAATTTAGACCGGTTCCAAACAGGAAGCAGATTGGCATTTGTEST: gi|169108015|gb|FE513298.1|FE513298
genomic: ACACCAAACTTGTGGCTTCACGAAATTTACCCGAGCCCATCCTTGTAGAGgtacctagga ... gttgtttcagGAATTTAGACCGGTTCCAAACAGGAAGCAGATTGGCATTTGT
EST: GAGCCCATCCTTGTAGAG GAATTTAGACCGGTTCCAAACAGGAAGCAGATTGGCATTTGTTTCAAGGCGEST: gi|169108316|gb|FE511961.1|FE511961
genomic: GAGCCCATCCTTGTAGAGgtacctagga ... gttgtttcagGAATTTAGACCGGTTCCAAACAGGAAGCAGATTGGCATTTGTTTCAAGGCG
EST: ACACCAAACTTGTGGCTTCACGAAATTTACCCGAGCCCATCCTTGTAGAG GAATTTAGACCGGTTCCAAACAGGAAGCAGATTGGCATTTGTTTCAAGGCG
genomic: ACACCAAACTTGTGGCTTCACGAAATTTACCCGAGCCCATCCTTGTAGAGgtacctagga ... gttgtttcagGAATTTAGACCGGTTCCAAACAGGAAGCAGATTGGCATTTGTTTCAAGGCG
gtacctaggattgaggaacagcgtcgtttctcatgccttcttgttgtttcagGAATTTAGACCGGTTCCAAACAGGAAGCAGATTGGCATTTGTTTCAAGGCGGACCAGAAGTTGGTGTTAGAATCCCTGGAG
ccttcttgttgtttc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacctaggattgaggaacagcgtcgtttctcatgccttcttgttgtttcagGAATTTAGACCGGTTCCAAACAGGAAGCAGATTGGCATTTGTTTCAAGGCGGACCAGAAGTTGGTGTTAGAATCCCTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT