1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtctttcctcttttttttttttctttttgtttccactgagtggattattcataggaagaatactgaaattttgtttttgttttcttttttttttcttctcgtgcgcagGCGAAGTGGTGTCCAGCTCCAGGTTGTGAATTTGCTGTCGAGTTTGTACCAGGCAGTGGATCCTACGACATCGTTTGCAAGTGCGGGCATTATTTCTGCT
species | Selaginella moellendorffii |
transcript | EFJ15174 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACAAGTACATGCGATTTCTCCTTAGATCTTACGTTGAAGATAATAGAAAG GCGAAGTGGTGTCCAGCTCCAGGTTGTGAATTTGCTGTCGAGTTTGTACCAEST: gi|169026295|gb|FE432658.1|FE432658
genomic: ACAAGTACATGCGATTTCTCCTTAGATCTTACGTTGAAGATAATAGAAAGgtctttcctc ... tcgtgcgcagGCGAAGTGGTGTCCAGCTCCAGGTTGTGAATTTGCTGTCGAGTTTGTACCA
EST: ACAAGTACATGCGATTTCTCCTTAGATCTTACGTTGAAGATAATAGAAAG GCGAAGTGGTGTCCAGCTCCAGGTTGTGAATTTGCTGTCGAGTTTGTACCAEST: gi|169096932|gb|FE497062.1|FE497062
genomic: ACAAGTACATGCGATTTCTCCTTAGATCTTACGTTGAAGATAATAGAAAGgtctttcctc ... tcgtgcgcagGCGAAGTGGTGTCCAGCTCCAGGTTGTGAATTTGCTGTCGAGTTTGTACCA
EST: ACAAGTACATGCGATTTCTCCTTAGATCTTACGTTGAAGATAATAGAAAG GCGAAGTGGTGTCCAGCTCCAGGTTGTGAATTTGCTGTCGAGTTTGTACCAEST: gi|169083837|gb|FE492749.1|FE492749
genomic: ACAAGTACATGCGATTTCTCCTTAGATCTTACGTTGAAGATAATAGAAAGgtctttcctc ... tcgtgcgcagGCGAAGTGGTGTCCAGCTCCAGGTTGTGAATTTGCTGTCGAGTTTGTACCA
EST: ACAAGTACATGCGATTTCTCCTTAGATCTTACGTTGAAGATAATAGAAAG GCGAAGTGGTGTCCAGCTCCAGGTTGTGAATTTGCTGTCGAGTTTGTACCAEST: gi|169064502|gb|FE472585.1|FE472585
genomic: ACAAGTACATGCGATTTCTCCTTAGATCTTACGTTGAAGATAATAGAAAGgtctttcctc ... tcgtgcgcagGCGAAGTGGTGTCCAGCTCCAGGTTGTGAATTTGCTGTCGAGTTTGTACCA
EST: ACAAGTACATGCGATTTCTCCTTAGATCTTACGTTGAAGATAATAGAAAG GCGAAGTGGTGTCCAGCTCCAGGTTGTGAATTTGCTGTCGAGTTTGTACCA
genomic: ACAAGTACATGCGATTTCTCCTTAGATCTTACGTTGAAGATAATAGAAAGgtctttcctc ... tcgtgcgcagGCGAAGTGGTGTCCAGCTCCAGGTTGTGAATTTGCTGTCGAGTTTGTACCA
ggaagaatactgaaattttgtttttgttttcttttttttttcttctcgtgcgcagGCGAAGTGGTGTCCAGCTCCAGGTTGTGAATTTGCTGTCGAGTTTGTACCAGGCAGTGGATCCTACGACATCGTTTGCAAGTGCGGGCATTATTTCTGCT
ttttgtttttgttttc CT-rich tract
aatactgaaattttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctttcctcttttttttttttctttttgtttccactgagtggattattcataggaagaatactgaaattttgtttttgttttcttttttttttcttctcgtgcgcagGCGAAGTGGTGTCCAGCTCCAGGTTGTGAATTTGCTGTCGAGTTTGTACCAGGCAGTGGATCCTACGACATCGTTTGCAAGTGCGGGCATTATTTCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA