1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagttttcatccttcagtttttgcttcccgttctcacaagtgtgaaacgtttttttgccagCTTCAGTTGTATTTCAAGCCAAAGCCTCAGGTAGGACCAGCGCCACGGCCAGCAACAGGCTTCCCGCCGAGCGTACCGCCAGGACTACCACGGCCTCCTC
species | Selaginella moellendorffii |
transcript | EFJ15163 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCAATGACAAGTTTTTCTTTCATTGGGATCAAGACTCCAAGCAGTTCACG CTTCAGTTGTATTTCAAGCCAAAGCCTCAGGTAGGACCAGCGCCACGGCCAEST: gi|169113992|gb|FE516463.1|FE516463
genomic: CCAATGACAAGTTTTTCTTTCATTGGGATCAAGACTCCAAGCAGTTCACGgtgagttttc ... tttttgccagCTTCAGTTGTATTTCAAGCCAAAGCCTCAGGTAGGACCAGCGCCACGGCCA
EST: CCAATGACAAGTTTTTCTTTCATTGGGATCAAGACTCCAAGCAGTTCACG CTTCAGTTGTATTTCAAGCCAAAGCCTCAGGTAGGACCAGCGCCACGGCCAEST: gi|169045847|gb|FE453081.1|FE453081
genomic: CCAATGACAAGTTTTTCTTTCATTGGGATCAAGACTCCAAGCAGTTCACGgtgagttttc ... tttttgccagCTTCAGTTGTATTTCAAGCCAAAGCCTCAGGTAGGACCAGCGCCACGGCCA
EST: CCAATGACAAGTTTTTCTTTCATTGGGATCAAGACTCCAAGCAGTTCACG CTTCAGTTGTATTTCAAGCCAAAGCCTCAGGTAGGACCAGCGCCACGGCCA
genomic: CCAATGACAAGTTTTTCTTTCATTGGGATCAAGACTCCAAGCAGTTCACGgtgagttttc ... tttttgccagCTTCAGTTGTATTTCAAGCCAAAGCCTCAGGTAGGACCAGCGCCACGGCCA
tcatccttcagtttttgcttcccgttctcacaagtgtgaaacgtttttttgccagCTTCAGTTGTATTTCAAGCCAAAGCCTCAGGTAGGACCAGCGCCACGGCCAGCAACAGGCTTCCCGCCGAGCGTACCGCCAGGACTACCACGGCCTCCTC
ttctcac putative branch site (score: 10)
tttttttgcc putative PPT
ttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttttcatccttcagtttttgcttcccgttctcacaagtgtgaaacgtttttttgccagCTTCAGTTGTATTTCAAGCCAAAGCCTCAGGTAGGACCAGCGCCACGGCCAGCAACAGGCTTCCCGCCGAGCGTACCGCCAGGACTACCACGGCCTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC