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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagacgagcgtgtctgacgtaatttcgatgactgatcttttcattttctgtttcgacgcagCAAATCCTTCGCTGGTTGTATCGTGTTGTGTATTGACCGGCATTTTGGGAGCTAATCTTTCGAGGCCGCTTCTTCTCAAAGCTACAAAGTCCGACGATCC

Basic information

species Selaginella moellendorffii
transcript EFJ14944
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169058829|gb|FE467662.1|FE467662
EST:     GAGCAACGTAACGTTTGCATTTGCATTGCCGGTAGGCAATCTCTTACAAG                         CAAATCCTTCGCTGGTTGTATCGTGTTGTGTATTGACTGGCATTTTGGGAG
genomic: GAGCAACGTAACGTTTGCATTTGCATTGCCGGTAGGCAATCTCTTACAAGgtgagacgag ... ttcgacgcagCAAATCCTTCGCTGGTTGTATCGTGTTGTGTATTGACCGGCATTTTGGGAG
EST: gi|169023163|gb|FE429215.1|FE429215
EST:     GAGCAACGTAACGTTTGCATTTGCATTGCCGGTAGGCAATCTCTTACAAG                         CAAATCCTTCGCTGGTTGTATCGTGTTGTGTATTGACTGGCATTTTGGGAG
genomic: GAGCAACGTAACGTTTGCATTTGCATTGCCGGTAGGCAATCTCTTACAAGgtgagacgag ... ttcgacgcagCAAATCCTTCGCTGGTTGTATCGTGTTGTGTATTGACCGGCATTTTGGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcgtgtctgacgtaatttcgatgactgatcttttcattttctgtttcgacgcagCAAATCCTTCGCTGGTTGTATCGTGTTGTGTATTGACCGGCATTTTGGGAGCTAATCTTTCGAGGCCGCTTCTTCTCAAAGCTACAAAGTCCGACGATCC
                       gactgat  putative branch site (score: 3)
                             tcttttcattttctgt  CT-rich tract
                               ttttcatttt  TA-rich tract