1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagatttactcttctttgcaatgtatccgctactaaactgtctctttgcagCGAGACTGTGAAGTTCGGGCATGTTACATTTTTCTGGAACGGAAACAGGTCTGGCTATTTTGATAGCAAGCTGGAAGAGTATGTTGAGATTCCTAGCGAT
species | Selaginella moellendorffii |
transcript | EFJ14459 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACCTCTGGTGAGTTTTTGGTAAAGAACGGCGTCCGGACTTTCGCTTGCAG CGAGACTGTGAAGTTCGGGCATGTTACATTTTTCTGGAEST: gi|169064549|gb|FE472632.1|FE472632
genomic: ACCTCTGGTGAGTTTTTGGTAAAGAACGGCGTCCGGACTTTCGCTTGCAGgtaagattta ... ctctttgcagCGAGACTGTGAAGTTCGGGCATGTTACATTTTTCTGGA
EST: ACCTCTGGTGAGTTTTTGGTAAAGAACGGCGTCCGGACTTTCGCTTGCAG CGAGACTGTGAAGTTCGGGCATGTTACATTTTTCTGGAACGGAAACAGGTCEST: gi|169081910|gb|FE487965.1|FE487965
genomic: ACCTCTGGTGAGTTTTTGGTAAAGAACGGCGTCCGGACTTTCGCTTGCAGgtaagattta ... ctctttgcagCGAGACTGTGAAGTTCGGGCATGTTACATTTTTCTGGAACGGAAACAGGTC
EST: ACCTCTGGTGAGTTTTTGGTAAAGAACGGCGTCCGGACTTTCGCTTGCAG CGAGACTGTGAAGTTCGGGCATGTTACATTTTTCTGGAACGAAAACAGGTCEST: gi|169081909|gb|FE487964.1|FE487964
genomic: ACCTCTGGTGAGTTTTTGGTAAAGAACGGCGTCCGGACTTTCGCTTGCAGgtaagattta ... ctctttgcagCGAGACTGTGAAGTTCGGGCATGTTACATTTTTCTGGAACGGAAACAGGTC
EST: GAACGGCGTCCGGACTTTCGCTTGCAG CGAGACTGTGAAGTTCGGGCATGTTACATTTTTCTGGAACGGAAACAGGTCEST: gi|169026519|gb|FE435820.1|FE435820
genomic: GAACGGCGTCCGGACTTTCGCTTGCAGgtaagattta ... ctctttgcagCGAGACTGTGAAGTTCGGGCATGTTACATTTTTCTGGAACGGAAACAGGTC
EST: TCCGGACTTTCGCTTGCAG CGAGACTGTGAAGTTCGGGCATGTTACATTTTTCTGGAACGGAAACAGGTC
genomic: TCCGGACTTTCGCTTGCAGgtaagattta ... ctctttgcagCGAGACTGTGAAGTTCGGGCATGTTACATTTTTCTGGAACGGAAACAGGTC
gtaagatttactcttctttgcaatgtatccgctactaaactgtctctttgcagCGAGACTGTGAAGTTCGGGCATGTTACATTTTTCTGGAACGGAAACAGGTCTGGCTATTTTGATAGCAAGCTGGAAGAGTATGTTGAGATTCCTAGCGAT
tactaaa putative branch site (score: 14)
ctgtctcttt CT-rich tract
agattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatttactcttctttgcaatgtatccgctactaaactgtctctttgcagCGAGACTGTGAAGTTCGGGCATGTTACATTTTTCTGGAACGGAAACAGGTCTGGCTATTTTGATAGCAAGCTGGAAGAGTATGTTGAGATTCCTAGCGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA