1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gaagggacttgacgcttcaagaggttaaccgagtctctcaggtctgtatagccatagccgatcataaaacttgatgttctcatggtttctctctttttagGTGGTGACCGGCTTGGCAGACCCCGCAGCAAATATCATATTTGGTGCTGTGGTCGACGAGAGATACGACGGCCAAGTTCACGTCACGATAATCGCCACTG
species | Selaginella moellendorffii |
transcript | EFJ14098 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCACGGGTGGAAGGGACTTGACGCTTCAAGAGGTTAACCGAGTCTCTCAG GTGGTGACCGGCTTGGCAGACCCCGCAGCAAATATCATATTTGGTGCTGTGEST: gi|169041214|gb|FE448668.1|FE448668
genomic: TCACTGGTGGAAGGGACTTGACGCTCCAAGAGGTTAACCGAGTCTCTCAGgtctgtatag ... ctctttttagGTGGTGACCGGCTTGGCAGACCCCGCAGCAAATATCATATTTGGTGCTGTG
EST: TCACTGGTGGAAGGGACTTGACGCTCCAAGAGGTTAACCGAGTCTCTCAG GTGGTGACCGGCTTGGCAGACCCCGCAGCAAATATCATATTTGGTGCTGTGEST: gi|169041215|gb|FE448669.1|FE448669
genomic: TCACTGGTGGAAGGGACTTGACGCTCCAAGAGGTTAACCGAGTCTCTCAGgtctgtatag ... ctctttttagGTGGTGACCGGCTTGGCAGACCCCGCAGCAAATATCATATTTGGTGCTGTG
EST: TCACTGGTGGAAGGGACTTGACGCTCCAAGAGGTTAACCGAGTCTCTCAG GTGGTGACCGGCTTGGCAGACCCCGCAGCAAATATCATATTTGGTGCTGTGEST: gi|169063875|gb|FE471230.1|FE471230
genomic: TCACTGGTGGAAGGGACTTGACGCTCCAAGAGGTTAACCGAGTCTCTCAGgtctgtatag ... ctctttttagGTGGTGACCGGCTTGGCAGACCCCGCAGCAAATATCATATTTGGTGCTGTG
EST: TCACGGGTGGAAGGGACTTGACGCTTCAAGAGGTTAACCGAGTCTCTCAG GTGGTGACCGGCTTG
genomic: TCACTGGTGGAAGGGACTTGACGCTCCAAGAGGTTAACCGAGTCTCTCAGgtctgtatag ... ctctttttagGTGGTGACCGGCTTG
gtatagccatagccgatcataaaacttgatgttctcatggtttctctctttttagGTGGTGACCGGCTTGGCAGACCCCGCAGCAAATATCATATTTGGTGCTGTGGTCGACGAGAGATACGACGGCCAAGTTCACGTCACGATAATCGCCACTG
acttgat putative branch site (score: 9)
ttctcatggtttctct CT-rich tract
atcataaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaagggacttgacgcttcaagaggttaaccgagtctctcaggtctgtatagccatagccgatcataaaacttgatgttctcatggtttctctctttttagGTGGTGACCGGCTTGGCAGACCCCGCAGCAAATATCATATTTGGTGCTGTGGTCGACGAGAGATACGACGGCCAAGTTCACGTCACGATAATCGCCACTG
- - - - - - - - - - - - - - - - gtctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtttc