1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatcgagcattccggaagaggagctaatccaatcctgtttgtgctccttccagTCGTCCGTTTTTGATTCGCAGCCAAAGTCAACAGTGGGAACCCCGGCATACATTGCACCGGAGGTGCTGTCCACCAAGAACTACGATGGGAAG
species | Selaginella moellendorffii |
transcript | EFJ13672 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACGGCAGCCCGGCTCCACGTCTCAAAATTTGTGACTTCGGCTACTCAAAG TCGTCCGTTTTTGATTCGCAGCCAAAGTCAACAGTGGGAACCCCGGCATACEST: gi|169107484|gb|FE508327.1|FE508327
genomic: ACGGCAGCCCGGCTCCACGTCTCAAAATTTGTGACTTCGGCTACTCAAAGgtatcgagca ... ctccttccagTCGTCCGTTTTTGATTCGCAGCCAAAGTCAACAGTGGGAACCCCGGCATAC
EST: GCAGCCCGGCTCCACGTCTCAAAATTTGTGACTTCGGCTACTCAAAG TCGTCCGTTTTTGATTCGCAGCCAAAGTCAACAGTGGGAACCCCGGCATACEST: gi|169063601|gb|FE471707.1|FE471707
genomic: GCAGCCCGGCTCCACGTCTCAAAATTTGTGACTTCGGCTACTCAAAGgtatcgagca ... ctccttccagTCGTCCGTTTTTGATTCGCAGCCAAAGTCAACAGTGGGAACCCCGGCATAC
EST: ACGGCAGCCCGGCTCCACGTCTCANAATTTGTGACTTCGGCTACTCAAAG TCGTCCGTTTTTGATTCGCAGCCAAAGTCAACAGTGGGAACCCCGGCATAC
genomic: ACGGCAGCCCGGCTCCACGTCTCAAAATTTGTGACTTCGGCTACTCAAAGgtatcgagca ... ctccttccagTCGTCCGTTTTTGATTCGCAGCCAAAGTCAACAGTGGGAACCCCGGCATAC
gtatcgagcattccggaagaggagctaatccaatcctgtttgtgctccttccagTCGTCCGTTTTTGATTCGCAGCCAAAGTCAACAGTGGGAACCCCGGCATACATTGCACCGGAGGTGCTGTCCACCAAGAACTACGATGGGAAG
agctaat putative branch site (score: 19)
tttgtgctccttcc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcgagcattccggaagaggagctaatccaatcctgtttgtgctccttccagTCGTCCGTTTTTGATTCGCAGCCAAAGTCAACAGTGGGAACCCCGGCATACATTGCACCGGAGGTGCTGTCCACCAAGAACTACGATGGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC