1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaatgatatatgctgaaagaaacgatcatacgttagttttctttgtgacatttgtgacagGGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTTAGTGAACAATGCGAGAGGAGCCCTCATGGATGCCAATGCGGTGGCGGAA
species | Selaginella moellendorffii |
transcript | EFJ13636 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTCACTGAGAAAACCAG GGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTTEST: gi|169056514|gb|FE464922.1|FE464922
genomic: GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAACCAGgtaatgatat ... tttgtgacagGGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTT
EST: GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTCACTGAGAAAACCAG GGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTTEST: gi|70670001|gb|DN838578.1|DN838578
genomic: GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAACCAGgtaatgatat ... tttgtgacagGGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTT
EST: GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAACCAG GGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGGTTTEST: gi|169067792|gb|FE473376.1|FE473376
genomic: GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAACCAGgtaatgatat ... tttgtgacagGGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGG-TTT
EST: GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTCACTGAGAAAACCAG GGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTTEST: gi|169104371|gb|FE503733.1|FE503733
genomic: GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAACCAGgtaatgatat ... tttgtgacagGGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTT
EST: GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAACCAG GGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTTEST: gi|169087508|gb|FE494625.1|FE494625
genomic: GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAACCAGgtaatgatat ... tttgtgacagGGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTT
EST: GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAACCAG GGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTTEST: gi|169079757|gb|FE491166.1|FE491166
genomic: GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAACCAGgtaatgatat ... tttgtgacagGGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTT
EST: GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTCACTGAGAAAACCAG GGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTTEST: gi|169079758|gb|FE491167.1|FE491167
genomic: GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAACCAGgtaatgatat ... tttgtgacagGGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTT
EST: GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTCACTGAGAAAACCAG GGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTTEST: gi|169060084|gb|FE468694.1|FE468694
genomic: GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAACCAGgtaatgatat ... tttgtgacagGGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTT
EST: GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAACCAG GGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTTEST: gi|169088324|gb|FE492042.1|FE492042
genomic: GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAACCAGgtaatgatat ... tttgtgacagGGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTT
EST: GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAACCAG GGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTTEST: gi|169106399|gb|FE507424.1|FE507424
genomic: GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAACCAGgtaatgatat ... tttgtgacagGGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTT
EST: GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAACCAG GGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTTEST: gi|169101312|gb|FE502507.1|FE502507
genomic: GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAACCAGgtaatgatat ... tttgtgacagGGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTT
EST: GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAACCAG GGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTTEST: gi|169101313|gb|FE502508.1|FE502508
genomic: GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAACCAGgtaatgatat ... tttgtgacagGGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTT
EST: GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAACCAG GGGATTCTTNNCA-CA-GGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTEST: gi|169048961|gb|FE454947.1|FE454947
genomic: GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAACCAGgtaatgatat ... tttgtgacagGGGATTCTT--CAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTT
EST: GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAACCAG GGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTTEST: gi|169088325|gb|FE492043.1|FE492043
genomic: GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAACCAGgtaatgatat ... tttgtgacagGGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTT
EST: GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAAC-AG GGGATTCTTCA-CA-GGACCGCATAAGCAAA-TGAAGAGAG
genomic: GCCAAGTGTGACGCGGTGGTGATGAATGTGCCGCTGACTGAGAAAACCAGgtaatgatat ... tttgtgacagGGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAG
atatatgctgaaagaaacgatcatacgttagttttctttgtgacatttgtgacagGGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTTAGTGAACAATGCGAGAGGAGCCCTCATGGATGCCAATGCGGTGGCGGAA
ttagtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgatatatgctgaaagaaacgatcatacgttagttttctttgtgacatttgtgacagGGGATTCTTCAACAAGGACCGCATAAGCAAAATGAAGAGAGGTGCGGTTTTAGTGAACAATGCGAGAGGAGCCCTCATGGATGCCAATGCGGTGGCGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA